Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03430 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 3.0e-108 395.2 200 100.0
Aqoxy1G02836 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 6.1e-77 291.2 194 78.9
Aqoxy7G00613 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 6.1e-77 291.2 194 78.9
Aqoxy6G00957 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 6.7e-76 287.7 194 76.8
Aqoxy7G00614 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 3.0e-68 262.3 184 73.4
Aqoxy1G02838 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 4.4e-59 231.9 138 83.3
Aqoxy4G01165 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 6.6e-39 164.9 91 87.9
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 3.4e-35 152.5 186 48.4
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 3.4e-35 152.5 186 48.4
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 4.4e-35 152.1 186 48.4
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 5.8e-35 151.8 186 48.4
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 5.8e-35 151.8 186 48.4
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 5.8e-35 151.8 186 47.8
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 7.5e-35 151.4 186 48.4
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 7.5e-35 151.4 186 48.4
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.5e-35 151.4 186 48.4
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.5e-35 151.4 186 48.4
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.5e-35 151.4 186 48.4
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 7.5e-35 151.4 186 48.4
BcaB04g19963 Brassica carinata HOM05D003084 ORTHO05D003580 9.8e-35 151.0 186 48.4
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 9.8e-35 151.0 186 48.4
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 9.8e-35 151.0 186 48.4
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 9.8e-35 151.0 186 48.4
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 9.8e-35 151.0 186 48.4
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 9.8e-35 151.0 186 48.4
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 1.3e-34 150.6 186 47.3
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 1.3e-34 150.6 186 47.3
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 1.3e-34 150.6 186 47.8
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 1.3e-34 150.6 186 48.4
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.3e-34 150.6 186 47.8
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.3e-34 150.6 186 47.8
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.3e-34 150.6 186 47.8
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 1.3e-34 150.6 186 47.8
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 1.3e-34 150.6 186 47.8
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 1.3e-34 150.6 186 47.8
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 1.3e-34 150.6 186 48.4
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 1.3e-34 150.6 186 47.8
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 1.3e-34 150.6 186 48.4
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 1.3e-34 150.6 186 48.4
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 1.3e-34 150.6 187 48.1
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.3e-34 150.6 186 48.4
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.3e-34 150.6 186 48.4
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 1.7e-34 150.2 186 47.8
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 1.7e-34 150.2 186 47.8
Atru.chr7.2125 Acer truncatum HOM05D003084 ORTHO05D003580 1.7e-34 150.2 186 47.8
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 1.7e-34 150.2 186 47.8
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 1.7e-34 150.2 186 47.8
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 1.7e-34 150.2 186 47.8
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 1.7e-34 150.2 186 48.4
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 2.2e-34 149.8 186 47.8
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 2.2e-34 149.8 186 47.8
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 2.2e-34 149.8 186 47.8
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 2.2e-34 149.8 186 47.8
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 2.2e-34 149.8 186 47.8
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 2.2e-34 149.8 186 47.8
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 2.2e-34 149.8 186 47.8
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 2.2e-34 149.8 186 47.8
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 47.8
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 47.8
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 47.3
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 47.3
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 47.3
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 47.3
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 47.8
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 47.8
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 48.4
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 48.4
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 47.3
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 47.8
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 47.8
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 47.3
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 47.3
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 46.8
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 47.3
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 2.9e-34 149.4 186 47.3
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 3.7e-34 149.1 186 47.8
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 3.7e-34 149.1 186 47.8
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 3.7e-34 149.1 186 47.8
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 3.7e-34 149.1 186 47.8
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 3.7e-34 149.1 186 47.8
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 4.9e-34 148.7 186 47.3
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 4.9e-34 148.7 186 47.3
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 4.9e-34 148.7 186 47.3
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 4.9e-34 148.7 186 47.3
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 4.9e-34 148.7 186 46.8
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 4.9e-34 148.7 186 46.8
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 4.9e-34 148.7 186 47.3
HPP92_010409 Vanilla planifolia HOM05D003084 ORTHO05D003580 4.9e-34 148.7 186 46.8
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 6.4e-34 148.3 186 46.8
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 6.4e-34 148.3 186 47.3
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 6.4e-34 148.3 186 47.3
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 6.4e-34 148.3 186 47.3
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 6.4e-34 148.3 186 47.3
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 6.4e-34 148.3 186 47.8
HPP92_019915 Vanilla planifolia HOM05D003084 ORTHO05D003580 6.4e-34 148.3 186 46.8
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 8.3e-34 147.9 186 46.8
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 8.3e-34 147.9 186 47.3
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 8.3e-34 147.9 186 47.3
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 8.3e-34 147.9 186 47.3
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 8.3e-34 147.9 186 47.3
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 8.3e-34 147.9 186 46.2
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 1.1e-33 147.5 186 47.3
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 1.1e-33 147.5 186 46.2
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 1.4e-33 147.1 186 47.3
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 1.4e-33 147.1 186 47.3
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 1.4e-33 147.1 186 46.8
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 1.4e-33 147.1 186 46.2
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 1.4e-33 147.1 186 46.8
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 1.4e-33 147.1 186 47.3
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 1.8e-33 146.7 186 46.2
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 1.8e-33 146.7 186 46.8
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 1.8e-33 146.7 186 46.8
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 1.8e-33 146.7 186 46.2
HPP92_010359 Vanilla planifolia HOM05D003084 ORTHO05D003580 1.8e-33 146.7 186 46.8
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 1.8e-33 146.7 186 47.3
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 3.2e-33 146.0 186 46.8
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 4.1e-33 145.6 186 46.2
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 7.0e-33 144.8 192 46.4
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 9.2e-33 144.4 186 46.8
ATR0307G103 Amborella trichopoda HOM05D003084 ORTHO05D003580 1.2e-32 144.1 186 46.8
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 1.6e-32 143.7 186 46.2
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 1.6e-32 143.7 186 46.2
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 2.0e-32 143.3 185 46.5
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 2.0e-32 143.3 186 45.7
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 2.0e-32 143.3 186 46.2
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 2.7e-32 142.9 186 44.6
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 3.5e-32 142.5 186 46.8
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 7.8e-32 141.4 159 50.9
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 1.7e-31 140.2 186 45.7
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 2.3e-31 139.8 186 44.1
Os02g0478900 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 2.3e-31 139.8 185 44.3
HPP92_010380 Vanilla planifolia HOM05D003084 ORTHO05D003580 2.3e-31 139.8 186 45.7
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 8.6e-31 137.9 166 48.8
DCAR_017867 Daucus carota HOM05D003084 ORTHO05D003580 1.1e-30 137.5 185 43.2
FAN21G2367 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.1e-30 137.5 186 44.6
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 3.3e-30 136.0 213 41.3
FvH4_3g24440 Fragaria vesca HOM05D003084 ORTHO05D003580 7.3e-30 134.8 186 44.1
FAN11G1592 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.3e-30 134.8 186 44.1
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 1.6e-29 133.7 183 45.4
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 2.8e-29 132.9 186 41.9
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 2.8e-29 132.9 186 44.6
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 4.7e-29 132.1 186 44.6
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 1.4e-28 130.6 178 43.3
DCAR_026292 Daucus carota HOM05D003084 ORTHO05D003580 2.3e-28 129.8 186 41.4
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 4.0e-28 129.0 186 42.5
Actinidia38789 Actinidia chinensis HOM05D003084 ORTHO05D003580 8.9e-28 127.9 148 49.3
C03p62000 Brassica napus HOM05D003084 ORTHO05D003580 2.2e-26 123.2 186 41.9
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 4.9e-26 122.1 186 41.9
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 6.4e-26 121.7 186 41.9
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 8.3e-26 121.3 186 41.9
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 7.8e-24 114.8 170 37.6
DCAR_028101 Daucus carota HOM05D003084 ORTHO05D003580 1.0e-23 114.4 182 42.3
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.0e-23 114.4 186 40.3
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 6.6e-23 111.7 186 38.2
RcHm_v2.0_Chr5g0043941 Rosa chinensis HOM05D003084 ORTHO05D003580 8.6e-23 111.3 186 39.8
Cfa022297 Carpinus fangiana HOM05D003084 ORTHO05D003580 1.9e-22 110.2 192 33.3
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.9e-22 110.2 186 37.6
ATR0618G025 Amborella trichopoda HOM05D003084 ORTHO05D003580 2.5e-22 109.8 143 46.2
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 3.3e-22 109.4 185 35.1
DCAR_024485 Daucus carota HOM05D003084 ORTHO05D003580 2.8e-21 106.3 190 38.9
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 3.4e-19 99.4 98 54.1
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 4.4e-19 99.0 123 45.5
DCAR_028103 Daucus carota HOM05D003084 ORTHO05D018407 2.9e-18 96.3 139 41.7
Rhsim09G0053300 Rhododendron simsii HOM05D003084 ORTHO05D003580 4.9e-18 95.5 91 56.0
Dinv04118 Davidia involucrata HOM05D003084 ORTHO05D003580 1.4e-09 67.4 51 62.7
PGSC0003DMG400009195 Solanum tuberosum HOM05D003084 ORTHO05D003580 2.1e-08 63.5 98 39.8
Solyc07g041790.1 Solanum lycopersicum HOM05D003084 ORTHO05D003580 7.8e-08 61.6 69 46.4
MD12G1233800 Malus domestica HOM05D003084 ORTHO05D003580 1.3e-07 60.8 115 36.5
CAN.G128.99 Capsicum annuum HOM05D003084 ORTHO05D003580 7.3e-06 55.1 100 37.0


User provided reference genes

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