Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G02943 Aquilegia oxysepala HOM05D004199 ORTHO05D077991 5.8e-41 170.2 74 100.0
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 6.2e-11 70.5 39 74.4
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 6.2e-11 70.5 39 74.4
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 3.1e-10 68.2 40 67.5
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 9.0e-10 66.6 39 66.7
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 9.0e-10 66.6 40 65.0
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 2.6e-09 65.1 40 60.0
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 2.6e-09 65.1 40 62.5
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 2.6e-09 65.1 40 62.5
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 2.6e-09 65.1 40 62.5
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 2.6e-09 65.1 39 66.7
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 3.4e-09 64.7 40 62.5
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 4.5e-09 64.3 40 62.5
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 4.5e-09 64.3 40 62.5
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 4.5e-09 64.3 40 62.5
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 5.8e-09 63.9 40 62.5
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 5.8e-09 63.9 40 62.5
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 5.8e-09 63.9 40 62.5
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 5.8e-09 63.9 40 62.5
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 5.8e-09 63.9 40 62.5
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 5.8e-09 63.9 39 64.1
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 7.6e-09 63.5 40 62.5
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 7.6e-09 63.5 40 60.0
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 7.6e-09 63.5 45 53.3
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 1.0e-08 63.2 40 60.0
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 1.0e-08 63.2 40 60.0
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 1.0e-08 63.2 40 60.0
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 1.0e-08 63.2 40 60.0
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.3e-08 62.8 39 61.5
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.7e-08 62.4 40 60.0
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 1.7e-08 62.4 38 68.4
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 1.7e-08 62.4 40 60.0
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 2.9e-08 61.6 40 60.0
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 2.9e-08 61.6 40 60.0
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 2.9e-08 61.6 40 62.5
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 2.9e-08 61.6 40 62.5
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 2.9e-08 61.6 38 63.2
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 2.9e-08 61.6 40 65.0
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 3.8e-08 61.2 40 57.5
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 3.8e-08 61.2 40 60.0
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 3.8e-08 61.2 40 60.0
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 3.8e-08 61.2 40 60.0
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 3.8e-08 61.2 40 60.0
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 3.8e-08 61.2 40 60.0
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 4.9e-08 60.8 37 64.9
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 4.9e-08 60.8 40 62.5
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 4.9e-08 60.8 40 62.5
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 4.9e-08 60.8 40 62.5
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 4.9e-08 60.8 40 62.5
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 4.9e-08 60.8 40 57.5
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 6.5e-08 60.5 40 57.5
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 6.5e-08 60.5 40 62.5
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 6.5e-08 60.5 40 62.5
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 6.5e-08 60.5 40 60.0
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 8.4e-08 60.1 40 55.0
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 8.4e-08 60.1 38 60.5
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 8.4e-08 60.1 40 57.5
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 1.1e-07 59.7 40 55.0
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 1.4e-07 59.3 40 60.0
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 1.4e-07 59.3 39 59.0
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 1.9e-07 58.9 39 56.4
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.9e-07 58.9 40 55.0
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 2.5e-07 58.5 40 57.5
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 2.5e-07 58.5 40 60.0
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.5e-07 58.5 41 53.7
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 2.5e-07 58.5 37 62.2
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.5e-07 58.5 40 60.0
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 2.5e-07 58.5 40 60.0
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 2.5e-07 58.5 37 64.9
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 2.5e-07 58.5 37 64.9
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 3.2e-07 58.2 37 64.9
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 3.2e-07 58.2 39 56.4
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 4.2e-07 57.8 40 55.0
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 5.5e-07 57.4 38 57.9
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 5.5e-07 57.4 39 56.4
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 5.5e-07 57.4 39 56.4
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 5.5e-07 57.4 39 53.8
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 7.1e-07 57.0 40 55.0
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 7.1e-07 57.0 40 52.5
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 7.1e-07 57.0 37 56.8
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 7.1e-07 57.0 37 56.8
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 9.3e-07 56.6 40 55.0
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 9.3e-07 56.6 39 64.1
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 9.3e-07 56.6 35 62.9
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 1.6e-06 55.8 38 60.5
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 1.6e-06 55.8 38 60.5
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 1.6e-06 55.8 38 60.5
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 2.1e-06 55.5 38 60.5
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.7e-06 55.1 40 50.0
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 2.7e-06 55.1 39 46.2
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 3.5e-06 54.7 35 60.0
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 4.6e-06 54.3 38 57.9
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 6.0e-06 53.9 36 55.6
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 6.0e-06 53.9 33 60.6
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 6.0e-06 53.9 38 57.9


User provided reference genes

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