Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 2.6e-64 248.4 116 100.0
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.9e-59 232.3 116 91.4
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 1.4e-54 216.1 114 84.2
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 1.4e-54 216.1 114 84.2
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 3.2e-54 214.9 116 83.6
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 4.2e-54 214.5 116 84.5
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 2.1e-53 212.2 114 84.2
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 7.9e-53 210.3 116 81.9
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 1.0e-52 209.9 122 80.3
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 1.0e-52 209.9 116 80.2
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.3e-52 209.5 116 82.8
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 2.3e-52 208.8 116 80.2
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 2.3e-52 208.8 111 86.5
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 3.0e-52 208.4 116 81.0
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 3.0e-52 208.4 116 81.0
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 3.0e-52 208.4 115 82.6
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 3.0e-52 208.4 111 82.9
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 3.9e-52 208.0 109 86.2
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 3.9e-52 208.0 111 84.7
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 5.1e-52 207.6 115 81.7
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 6.7e-52 207.2 111 84.7
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 8.7e-52 206.8 115 82.6
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 1.1e-51 206.5 111 84.7
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 1.5e-51 206.1 111 84.7
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 1.5e-51 206.1 111 84.7
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 1.5e-51 206.1 111 84.7
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 1.5e-51 206.1 115 80.0
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 1.5e-51 206.1 115 80.0
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.9e-51 205.7 111 82.9
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 1.9e-51 205.7 114 77.2
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 1.9e-51 205.7 115 80.0
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.9e-51 205.7 111 82.0
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 2.5e-51 205.3 111 85.6
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 2.5e-51 205.3 115 81.7
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 2.5e-51 205.3 115 79.1
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 2.5e-51 205.3 111 84.7
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 3.3e-51 204.9 111 82.0
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 4.3e-51 204.5 111 82.9
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 4.3e-51 204.5 111 83.8
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 7.4e-51 203.8 111 84.7
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 7.4e-51 203.8 111 84.7
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 7.4e-51 203.8 111 84.7
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 2.2e-50 202.2 115 80.0
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 2.2e-50 202.2 114 77.2
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 2.2e-50 202.2 113 80.5
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 2.2e-50 202.2 113 80.5
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 2.8e-50 201.8 116 75.9
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 3.7e-50 201.4 113 80.5
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 6.3e-50 200.7 113 81.4
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 1.1e-49 199.9 111 80.2
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 1.4e-49 199.5 113 77.0
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 1.8e-49 199.1 111 81.1
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 2.4e-49 198.7 111 82.0
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 3.1e-49 198.4 109 82.6
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 3.1e-49 198.4 111 80.2
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 4.1e-49 198.0 111 81.1
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 6.9e-49 197.2 111 80.2
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 6.9e-49 197.2 115 75.7
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 9.0e-49 196.8 115 77.4
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 9.0e-49 196.8 111 79.3
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 9.0e-49 196.8 111 77.5
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 9.0e-49 196.8 111 78.4
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 1.2e-48 196.4 111 80.2
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 1.2e-48 196.4 111 82.0
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 3.4e-48 194.9 111 77.5
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 4.5e-48 194.5 111 77.5
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 5.9e-48 194.1 111 76.6
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 5.9e-48 194.1 111 78.4
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 7.7e-48 193.7 107 82.2
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 7.7e-48 193.7 111 76.6
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 7.7e-48 193.7 115 74.8
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 7.7e-48 193.7 111 77.5
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 1.0e-47 193.4 111 76.6
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 1.0e-47 193.4 111 77.5
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 1.7e-47 192.6 111 77.5
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.7e-47 192.6 111 77.5
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.7e-47 192.6 111 77.5
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.7e-47 192.6 111 77.5
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.7e-47 192.6 111 77.5
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 1.7e-47 192.6 109 76.1
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 2.2e-47 192.2 111 74.8
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 2.9e-47 191.8 111 75.7
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 2.9e-47 191.8 111 75.7
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 2.9e-47 191.8 111 75.7
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 2.9e-47 191.8 111 74.8
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 2.9e-47 191.8 111 75.7
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 2.9e-47 191.8 111 75.7
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 2.9e-47 191.8 111 75.7
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 3.8e-47 191.4 111 74.8
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 3.8e-47 191.4 111 74.8
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 3.8e-47 191.4 111 74.8
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 3.8e-47 191.4 111 74.8
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 6.5e-47 190.7 111 74.8
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 1.1e-46 189.9 111 73.9
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 1.4e-46 189.5 111 73.0
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 2.5e-46 188.7 111 73.9
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 2.5e-46 188.7 111 73.9
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 4.2e-46 188.0 111 73.0
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 4.2e-46 188.0 111 74.8
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 4.2e-46 188.0 111 74.8
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 5.5e-46 187.6 115 72.2
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 7.2e-46 187.2 100 83.0
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 1.6e-45 186.0 109 74.3
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 2.1e-45 185.7 113 75.2
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 2.1e-45 185.7 109 72.5
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 6.1e-45 184.1 147 62.6
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 3.0e-44 181.8 109 73.4
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 3.0e-44 181.8 109 73.4
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 3.9e-44 181.4 94 87.2
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 5.1e-44 181.0 111 74.8
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 6.7e-44 180.6 111 67.6
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 6.7e-44 180.6 111 67.6
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 1.1e-43 179.9 94 85.1
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 1.1e-43 179.9 98 80.6
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 1.5e-43 179.5 100 82.0
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 2.0e-43 179.1 100 82.0
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 2.0e-43 179.1 96 84.4
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 5.7e-43 177.6 111 65.8
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 1.7e-42 176.0 95 84.2
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 1.8e-41 172.6 106 69.8
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 6.9e-41 170.6 98 76.5
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 4.5e-40 167.9 109 64.2
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 4.5e-40 167.9 115 64.3
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 4.5e-40 167.9 115 64.3
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 5.9e-40 167.5 106 67.9
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 1.7e-39 166.0 144 54.9
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 2.2e-39 165.6 88 83.0
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 2.9e-39 165.2 107 65.4
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 3.8e-39 164.9 151 53.6
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 6.1e-37 157.5 122 60.7
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 4.4e-35 151.4 78 84.6
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 1.7e-34 149.4 78 82.1
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 3.7e-34 148.3 77 84.4
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 6.3e-34 147.5 78 83.3
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 2.4e-33 145.6 97 64.9
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 2.4e-33 145.6 73 86.3
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 4.1e-33 144.8 79 78.5
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 3.5e-32 141.7 77 81.8
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 2.3e-28 129.0 92 59.8
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 6.7e-28 127.5 73 75.3
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 4.4e-27 124.8 104 49.0
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 2.8e-26 122.1 118 57.6
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 1.4e-25 119.8 93 53.8
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 1.4e-25 119.8 98 64.3
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.0e-23 113.6 73 74.0
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 8.0e-21 104.0 73 68.5
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 3.7e-18 95.1 63 63.5
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 3.7e-18 95.1 63 63.5
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 3.7e-18 95.1 63 63.5
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 4.8e-18 94.7 100 44.0
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 7.7e-16 87.4 57 66.7
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 5.0e-15 84.7 55 67.3
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 8.5e-15 84.0 94 39.4
Rhsim12G0090000 Rhododendron simsii HOM05D004582 ORTHO05D005507 1.2e-13 80.1 148 36.5
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 1.6e-13 79.7 75 57.3
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 1.8e-12 76.3 41 82.9
Cfa023443 Carpinus fangiana HOM05D004582 ORTHO05D123741 1.3e-10 70.1 83 38.6
Cpa.g.sc887.1 Carica papaya HOM05D004582 ORTHO05D005507 2.2e-10 69.3 37 86.5
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.6e-08 63.2 73 47.9


User provided reference genes

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