Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 0.0e+00 1182.9 619 100.0
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 0.0e+00 1101.7 619 93.5
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 7.5e-243 844.0 604 74.3
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 2.3e-236 822.4 616 70.6
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 7.8e-232 807.4 617 69.2
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.9e-230 802.7 618 70.7
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 1.6e-229 799.7 604 70.0
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 5.2e-228 794.7 617 68.6
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 1.5e-227 793.1 622 70.4
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 6.4e-226 787.7 627 67.6
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 2.4e-225 785.8 628 67.0
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 3.2e-225 785.4 616 68.5
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.1e-224 782.7 627 67.1
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 5.1e-223 778.1 616 67.7
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 5.1e-223 778.1 616 69.0
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 6.6e-223 777.7 637 66.6
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 1.1e-222 776.9 627 66.5
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 2.5e-222 775.8 631 66.7
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 9.6e-222 773.9 628 68.5
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 9.6e-222 773.9 615 66.7
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 3.4e-219 765.4 622 67.4
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 5.8e-219 764.6 622 67.0
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 5.8e-219 764.6 622 67.4
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 5.8e-219 764.6 642 66.8
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 2.9e-218 762.3 630 67.5
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.2e-217 758.8 658 63.8
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 7.1e-217 757.7 622 66.9
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 1.2e-216 756.9 622 66.9
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 1.6e-216 756.5 621 66.3
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.0e-215 753.8 620 65.0
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 3.9e-215 751.9 616 66.2
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 1.5e-214 750.0 620 66.3
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 4.3e-214 748.4 626 66.0
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 9.6e-214 747.3 622 63.8
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 4.8e-213 745.0 622 66.1
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 1.1e-212 743.8 617 65.5
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.1e-212 742.3 614 64.5
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 2.6e-211 739.2 619 66.2
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 5.8e-211 738.0 628 64.2
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 7.6e-211 737.6 617 64.3
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.3e-210 736.9 617 64.2
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 3.8e-210 735.3 615 63.9
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 4.9e-210 734.9 611 66.1
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 3.5e-208 728.8 616 65.4
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 5.1e-207 724.9 618 64.4
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 3.3e-206 722.2 616 62.8
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 5.6e-206 721.5 617 64.7
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 9.6e-206 720.7 620 65.0
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.1e-204 717.2 621 64.1
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 6.9e-204 714.5 641 63.7
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 1.5e-203 713.4 659 61.3
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 7.6e-203 711.1 619 65.4
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.3e-202 710.3 619 64.8
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 1.7e-202 709.9 627 61.9
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 2.9e-202 709.1 624 64.4
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 6.4e-202 708.0 623 62.4
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 1.1e-201 707.2 621 62.8
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 1.9e-201 706.4 618 63.8
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 3.2e-201 705.7 617 64.2
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 9.3e-201 704.1 647 62.3
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 3.0e-199 699.1 627 63.2
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 3.9e-199 698.7 625 63.4
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 4.3e-198 695.3 620 63.1
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 4.8e-197 691.8 632 60.8
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 4.8e-197 691.8 617 62.6
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 2.4e-196 689.5 618 62.1
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 1.5e-195 686.8 625 61.0
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.0e-195 686.4 618 64.6
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 5.8e-195 684.9 632 64.6
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 1.0e-194 684.1 604 63.2
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 1.3e-194 683.7 617 62.1
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 1.3e-194 683.7 617 61.9
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 2.9e-194 682.6 639 60.9
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 3.8e-194 682.2 617 62.1
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 3.8e-194 682.2 601 61.9
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 1.0e-191 674.1 616 61.5
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.3e-191 673.7 621 59.9
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 1.8e-191 673.3 618 61.3
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.3e-190 668.7 651 57.3
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 4.8e-189 665.2 528 67.6
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 3.1e-188 662.5 617 58.7
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 1.0e-186 657.5 626 60.1
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.9e-185 653.3 637 57.9
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 3.2e-185 652.5 569 62.2
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 1.1e-182 644.0 559 63.9
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.5e-182 643.7 599 58.9
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 1.9e-182 643.3 562 61.7
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 2.5e-182 642.9 636 57.9
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 2.4e-180 636.3 659 55.2
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 5.3e-180 635.2 629 57.6
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 5.9e-179 631.7 629 58.2
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 7.7e-179 631.3 623 60.0
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 3.0e-175 619.4 621 57.0
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 6.7e-175 618.2 506 64.4
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 1.1e-174 617.5 566 61.5
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 7.4e-174 614.8 614 58.6
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 2.2e-173 613.2 626 57.5
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 1.2e-171 607.4 556 59.2
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 7.2e-169 598.2 625 55.5
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.8e-167 593.6 588 56.5
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 1.4e-164 583.9 528 60.8
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.8e-164 583.6 637 56.0
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 1.4e-159 567.4 607 58.6
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 6.5e-154 548.5 563 56.0
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 3.2e-145 519.6 341 78.0
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 4.7e-144 515.8 436 66.1
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 4.0e-143 512.7 399 68.9
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 1.2e-142 511.1 614 51.1
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 1.1e-140 504.6 341 75.4
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.8e-136 490.0 320 76.9
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 4.7e-136 489.2 524 55.2
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 3.7e-133 479.6 558 53.4
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 5.9e-131 472.2 339 72.0
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.3e-129 465.3 505 53.7
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 1.7e-125 454.1 519 50.7
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 2.0e-118 430.6 401 60.1
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 3.7e-117 426.4 391 60.4
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 5.2e-103 379.4 651 40.7
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 4.2e-92 343.2 365 54.2
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 3.5e-91 340.1 279 66.3
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.4e-89 332.4 346 59.0
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 3.7e-88 330.1 374 57.0
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 1.6e-83 314.7 501 40.5
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 8.7e-82 308.9 328 56.7
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 1.9e-81 307.8 196 82.1
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 1.4e-79 301.6 685 35.0
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 2.3e-74 284.3 223 68.6
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 3.6e-67 260.4 273 55.3
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 7.9e-67 259.2 269 54.3
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 3.0e-66 257.3 225 58.7
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 5.1e-66 256.5 343 51.3
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 7.7e-62 242.7 234 56.4
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 3.8e-61 240.4 271 52.0
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 3.3e-57 227.3 649 30.8
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.7e-57 226.5 241 54.4
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 1.0e-53 215.7 272 50.7
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 1.6e-51 208.4 270 46.7
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 8.8e-50 202.6 276 46.4
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 2.2e-48 198.0 106 93.4
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 4.8e-48 196.8 308 42.5
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 3.2e-44 184.1 149 73.8
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 5.5e-44 183.3 500 32.6
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 5.2e-42 176.8 274 43.1
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.8e-40 171.0 205 48.3
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 2.4e-39 167.9 317 36.9
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.6e-38 165.2 107 78.5
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 2.0e-38 164.9 188 51.6
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.2e-36 156.4 163 51.5
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 5.2e-34 150.2 149 57.0
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 3.4e-33 147.5 75 100.0
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 7.5e-33 146.4 75 100.0
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.2e-32 144.8 237 40.5
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 4.8e-32 143.7 81 91.4
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 1.7e-29 135.2 126 61.9
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.3e-29 134.8 144 56.2
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 7.2e-28 129.8 322 31.7
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.3e-24 119.0 199 39.2
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 1.7e-24 118.6 319 36.1
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 4.1e-23 114.0 386 28.5
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 4.1e-23 114.0 118 50.8
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 5.4e-23 113.6 118 52.5
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.0e-22 111.7 160 45.0
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 9.5e-20 102.8 141 39.7
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 2.1e-19 101.7 80 60.0
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 6.1e-19 100.1 173 35.8
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 8.9e-18 96.3 252 28.2
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 2.9e-16 91.3 124 45.2
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 6.6e-13 80.1 107 47.7
PSO561G0043 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-10 72.8 93 46.2
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.3e-10 71.6 100 47.0
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 5.8e-09 67.0 75 49.3
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 3.2e-07 61.2 38 89.5
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 9.2e-07 59.7 38 86.8
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 9.2e-07 59.7 47 59.6
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 2.1e-06 58.5 115 45.2
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 3.5e-06 57.8 73 45.2
PSO063G2507 Papaver somniferum HOM05D003724 ORTHO05D004367 4.6e-06 57.4 61 47.5


User provided reference genes

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