Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 0.0e+00 1345.1 762 100.0
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 4.8e-300 1034.2 758 76.8
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 1.0e-294 1016.5 758 72.3
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 3.4e-293 1011.5 759 73.3
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 4.1e-291 1004.6 758 72.3
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 1.3e-289 999.6 758 72.0
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 3.8e-289 998.0 759 71.9
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 8.5e-289 996.9 758 71.5
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 6.8e-286 987.3 759 70.4
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 6.8e-286 987.3 758 71.4
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 8.8e-286 986.9 759 71.3
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 8.8e-286 986.9 720 77.9
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 1.5e-285 986.1 758 71.1
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 1.5e-285 986.1 758 71.1
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 3.4e-285 984.9 758 71.5
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 5.7e-285 984.2 758 71.4
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 2.8e-284 981.9 758 71.2
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 3.7e-284 981.5 758 70.8
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 4.9e-284 981.1 758 70.3
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 8.3e-284 980.3 758 70.6
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 8.3e-284 980.3 758 70.8
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 1.4e-283 979.5 758 71.0
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 1.4e-283 979.5 758 70.7
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 3.1e-283 978.4 758 71.1
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 4.1e-283 978.0 758 71.2
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 1.2e-282 976.5 758 70.8
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 1.0e-281 973.4 758 70.8
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 1.3e-281 973.0 759 73.3
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 8.6e-281 970.3 758 73.4
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 8.6e-281 970.3 760 70.1
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 1.5e-280 969.5 758 70.3
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 1.9e-280 969.1 758 70.1
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 3.3e-280 968.4 758 70.3
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 5.6e-280 967.6 832 59.9
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 9.5e-280 966.8 758 68.7
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 9.5e-280 966.8 758 70.7
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 2.8e-279 965.3 758 70.3
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 4.7e-279 964.5 758 69.3
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 1.4e-278 963.0 759 72.5
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 3.4e-277 958.4 762 69.4
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 9.8e-277 956.8 758 68.7
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 1.7e-276 956.1 759 68.4
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 3.7e-276 954.9 748 62.4
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 4.9e-276 954.5 759 62.5
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 1.1e-275 953.4 758 71.9
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 1.4e-275 953.0 758 68.5
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 1.8e-275 952.6 758 62.0
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 7.0e-275 950.7 762 69.2
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 2.7e-274 948.7 758 69.7
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 7.8e-274 947.2 759 68.1
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.3e-273 946.4 766 67.5
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 8.6e-273 943.7 757 68.8
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 1.9e-272 942.6 758 67.9
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 2.5e-272 942.2 758 68.3
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 3.3e-272 941.8 760 68.9
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 4.3e-272 941.4 738 62.3
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 4.3e-272 941.4 760 69.1
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 7.3e-272 940.6 758 68.9
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 2.1e-271 939.1 758 67.7
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 4.7e-271 937.9 760 68.7
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 6.2e-271 937.6 758 67.7
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.4e-270 936.4 774 66.7
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 5.2e-270 934.5 761 68.5
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 1.5e-269 932.9 738 68.8
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 2.6e-269 932.2 759 67.1
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 5.8e-269 931.0 754 68.7
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 9.8e-269 930.2 759 66.9
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.3e-268 929.9 783 65.9
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 1.7e-268 929.5 759 67.2
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 2.2e-268 929.1 759 67.2
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 2.2e-268 929.1 759 67.2
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 6.4e-268 927.5 759 67.1
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 2.4e-267 925.6 759 68.1
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 9.2e-267 923.7 759 66.8
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 1.2e-266 923.3 759 70.9
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 2.3e-265 919.1 758 66.8
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 2.8e-263 912.1 758 66.1
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 3.4e-261 905.2 802 64.2
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 3.2e-259 898.7 803 63.3
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 1.7e-257 892.9 818 62.1
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 1.2e-255 886.7 756 68.1
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 1.4e-254 883.2 773 58.1
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 2.3e-254 882.5 763 65.5
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 5.2e-254 881.3 760 66.1
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 4.4e-253 878.2 760 65.5
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 4.1e-251 871.7 809 56.1
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 1.3e-249 866.7 646 72.6
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 1.2e-245 853.6 758 62.8
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 1.2e-245 853.6 759 63.1
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 4.2e-243 845.1 749 64.5
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 2.7e-242 842.4 758 63.9
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 6.6e-241 837.8 670 70.3
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 2.1e-239 832.8 670 70.1
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 2.6e-237 825.9 760 63.6
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 4.5e-237 825.1 724 66.0
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 3.2e-235 818.9 671 68.0
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 1.0e-233 813.9 797 59.3
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 3.9e-233 812.0 670 68.8
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 4.3e-224 781.9 543 69.2
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 2.5e-216 756.1 560 67.1
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 2.2e-196 689.9 765 54.1
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 1.2e-194 684.1 750 54.3
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 9.7e-192 674.5 567 59.8
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 1.6e-186 657.1 764 53.5
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 1.3e-183 647.5 660 56.4
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 4.0e-177 625.9 533 66.6
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 8.3e-175 618.2 767 47.8
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 2.3e-172 610.1 513 70.8
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 1.2e-146 524.6 756 46.0
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 1.8e-145 520.8 394 64.5
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 7.1e-134 482.3 440 58.6
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 1.2e-128 464.9 344 67.2
Hma1.2p1_0066F.1_g036750 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 1.4e-110 404.8 341 73.6
Oeu010560.1 Olea europaea HOM05D004755 ORTHO05D006137 9.4e-94 349.0 273 63.4
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 1.8e-89 334.7 375 50.1
SHI05426 Sapria himalayana HOM05D004755 ORTHO05D006137 3.9e-76 290.4 336 59.8
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 1.1e-70 272.3 796 28.3
AagrBONN_evm.TU.Sc2ySwM_368.805 Anthoceros agrestis HOM05D004755 ORTHO05D006137 8.0e-69 266.2 339 59.9
MCO13G192 Micromonas commoda HOM05D004755 ORTHO05D006137 4.4e-67 260.4 825 27.0
Cre09.g389912 Chlamydomonas reinhardtii HOM05D004755 ORTHO05D006137 8.5e-63 246.1 883 30.7
Lsat_1_v5_gn_9_93780 Lactuca sativa HOM05D004755 ORTHO05D006137 1.8e-60 238.4 146 75.3
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 3.0e-60 237.7 157 67.5
SHI05427 Sapria himalayana HOM05D004755 ORTHO05D006137 6.3e-58 229.9 208 52.9
SalBow6G1464 Salvia bowleyana HOM05D004755 ORTHO05D006137 8.3e-58 229.6 141 70.2
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 6.3e-50 203.4 124 75.0
Cpa.g.sc62.109 Carica papaya HOM05D004755 ORTHO05D006137 1.1e-49 202.6 131 71.8
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 7.0e-49 199.9 159 61.0
SEGI_26304 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 3.2e-41 174.5 123 61.8
PRCOL_00000489 Prasinoderma coloniale HOM05D004755 ORTHO05D006137 9.5e-38 162.9 429 30.1
Lsat_1_v5_gn_3_56800 Lactuca sativa HOM05D004755 ORTHO05D006137 1.2e-35 156.0 146 61.0
Thecc.09G060700 Theobroma cacao HOM05D004755 ORTHO05D006137 1.9e-30 138.7 101 69.3
TPR.G18928 Trifolium pratense HOM05D004755 ORTHO05D006137 5.2e-28 130.6 114 63.2
QL11p041806 Quercus lobata HOM05D004755 ORTHO05D006137 2.6e-27 128.3 88 75.0
Glyma.01G127800 Glycine max HOM05D004755 ORTHO05D006137 9.9e-27 126.3 88 75.0
QL11p041511 Quercus lobata HOM05D004755 ORTHO05D006137 1.3e-26 125.9 88 73.9
Lsat_1_v5_gn_3_67820 Lactuca sativa HOM05D001195 ORTHO05D001138 5.4e-25 120.6 108 61.1
CDE05G0342 Ceratophyllum demersum HOM05D004755 ORTHO05D006137 7.1e-25 120.2 104 55.8
QL11p041742 Quercus lobata HOM05D004755 ORTHO05D006137 6.0e-24 117.1 88 69.3
SEGI_36377 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.3e-23 115.9 88 64.8
Rhsim12G0078300 Rhododendron simsii HOM05D004755 ORTHO05D006137 3.0e-23 114.8 136 47.1
Ca_08127_v3 Cicer arietinum L. HOM05D009313 ORTHO05D011011 4.7e-21 107.5 85 60.0
SEGI_11122 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.4e-17 95.9 89 55.1
CARHR099950 Cardamine hirsuta HOM05D004755 ORTHO05D006137 2.4e-17 95.1 73 60.3
TAR376G1072 Trochodendron aralioides HOM05D004755 ORTHO05D006137 1.6e-16 92.4 66 63.6
PGSC0003DMG400025184 Solanum tuberosum HOM05D004755 ORTHO05D006137 2.1e-16 92.0 66 68.2
CsaV3_6G026350 Cucumis sativus L. HOM05D004755 ORTHO05D006137 3.5e-16 91.3 57 68.4
BcaB01g04782 Brassica carinata HOM05D004755 ORTHO05D039688 9.6e-14 83.2 90 44.4
BcaB01g04780 Brassica carinata HOM05D040276 ORTHO05D039688 3.6e-13 81.3 66 53.0
CsaV3_2G000030 Cucumis sativus L. HOM05D004755 ORTHO05D006137 3.8e-10 71.2 45 71.1
CAN.G572.59 Capsicum annuum HOM05D000541 ORTHO05D000137 3.0e-07 61.6 41 68.3
BcaB07g33726 Brassica carinata HOM05D002288 ORTHO05D002894 6.6e-07 60.5 105 34.3
Actinidia22488 Actinidia chinensis HOM05D004755 ORTHO05D056945 8.7e-07 60.1 120 35.8
Prupe.3G255400 Prunus persica HOM05D005508 ORTHO05D006882 1.9e-06 58.9 158 29.1
Haze_01851 Corylus avellana HOM05D004755 ORTHO05D006137 3.3e-06 58.2 42 64.3
TPR.G17575 Trifolium pratense HOM05D001335 ORTHO05D001184 7.3e-06 57.0 102 32.4


User provided reference genes

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