Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G01707 Aquilegia oxysepala HOM05D004758 ORTHO05D006063 0.0e+00 1347.8 879 100.0
Aqoxy3G02274 Aquilegia oxysepala HOM05D004758 ORTHO05D006063 0.0e+00 1289.6 885 95.9
TAR375G0794 Trochodendron aralioides HOM05D004758 ORTHO05D006063 3.3e-268 928.7 885 70.7
Nn1g00147 Nelumbo nucifera HOM05D004758 ORTHO05D006063 8.1e-267 924.1 831 75.9
Actinidia08754 Actinidia chinensis HOM05D004758 ORTHO05D006063 1.5e-244 850.1 887 67.5
Sabra13G0073200 Salix brachista HOM05D004758 ORTHO05D006063 9.7e-244 847.4 961 63.1
QL09p022998 Quercus lobata HOM05D004758 ORTHO05D006063 8.5e-240 834.3 887 68.8
Dinv29141 Davidia involucrata HOM05D004758 ORTHO05D006063 1.6e-238 830.1 887 68.9
Potri.013G079600 Populus trichocarpa HOM05D004758 ORTHO05D006063 4.6e-238 828.6 879 66.7
TWI09G0087 Tripterygium wilfordii HOM05D004758 ORTHO05D006063 3.9e-237 825.5 887 67.6
Hma1.2p1_0419F.1_g149420 Hydrangea macrophylla HOM05D004758 ORTHO05D006063 4.8e-235 818.5 887 67.0
MBI04_g20348_MAGBIO Magnolia biondii HOM05D004758 ORTHO05D006063 2.0e-233 813.1 888 63.1
GSVIVG01024351001 Vitis vinifera HOM05D004758 ORTHO05D006063 3.4e-233 812.4 895 69.4
CiPaw.05G215200 Carya illinoinensis HOM05D004758 ORTHO05D006063 3.8e-232 808.9 889 68.5
MELO3C002835.2 Cucumis melo HOM05D004758 ORTHO05D006063 6.5e-232 808.1 884 64.3
AUR62034925 Chenopodium quinoa HOM05D004758 ORTHO05D006063 1.1e-231 807.4 883 58.8
CsaV3_1G037130 Cucumis sativus L. HOM05D004758 ORTHO05D006063 1.2e-230 803.9 877 63.6
Thecc.05G217400 Theobroma cacao HOM05D004758 ORTHO05D006063 3.6e-230 802.4 885 65.8
Oeu038086.1 Olea europaea HOM05D004758 ORTHO05D006063 1.4e-229 800.4 885 67.7
ClCG09G017100 Citrullus lanatus HOM05D004758 ORTHO05D006063 1.1e-228 797.3 813 67.7
Manes.09G127900 Manihot esculenta HOM05D004758 ORTHO05D006063 2.0e-225 786.6 887 63.5
VMungo1215G2684 Vigna mungo HOM05D004758 ORTHO05D006063 3.5e-225 785.8 881 63.6
CDE06G0148 Ceratophyllum demersum HOM05D004758 ORTHO05D006063 5.9e-225 785.0 887 67.1
Sed0006906 Sechium edule HOM05D004758 ORTHO05D006063 8.5e-224 781.2 889 63.3
Phvul.003G200800 Phaseolus vulgaris HOM05D004758 ORTHO05D006063 2.5e-223 779.6 886 63.0
Prupe.2G326400 Prunus persica HOM05D004758 ORTHO05D006063 3.2e-223 779.2 870 66.4
Medtr4g105700 Medicago truncatula HOM05D004758 ORTHO05D006063 4.2e-223 778.9 907 63.8
AUR62026609 Chenopodium quinoa HOM05D004758 ORTHO05D006063 1.2e-222 777.3 855 55.4
Gorai.013G183600 Gossypium raimondii HOM05D004758 ORTHO05D006063 2.7e-222 776.2 844 64.2
Gohir.A13G156800 Gossypium hirsutum HOM05D004758 ORTHO05D006063 6.1e-222 775.0 853 64.0
Psat4g058120 Pisum sativum HOM05D004758 ORTHO05D006063 1.0e-221 774.2 865 66.4
Gohir.D13G161600 Gossypium hirsutum HOM05D004758 ORTHO05D006063 2.3e-221 773.1 884 62.1
COL.COLO4_37813 Corchorus olitorius HOM05D004758 ORTHO05D006063 7.4e-220 768.1 914 62.6
ATR0829G002 Amborella trichopoda HOM05D004758 ORTHO05D006063 1.3e-219 767.3 915 61.5
MD07G1309100 Malus domestica HOM05D004758 ORTHO05D006063 2.2e-219 766.5 872 65.9
Migut.F00084 Erythranthe guttata HOM05D004758 ORTHO05D006063 4.8e-219 765.4 875 64.5
Haze_00389 Corylus avellana HOM05D004758 ORTHO05D006063 8.2e-219 764.6 991 59.0
Hund26668 Selenicereus undatus HOM05D004758 ORTHO05D006063 1.1e-218 764.2 870 64.4
Aa31LG11G12880 Aethionema arabicum HOM05D004758 ORTHO05D006063 1.4e-218 763.8 832 64.8
AL6G27760 Arabidopsis lyrata HOM05D004758 ORTHO05D006063 1.4e-218 763.8 876 62.3
THA.LOC104827198 Tarenaya hassleriana HOM05D004758 ORTHO05D006063 3.1e-218 762.7 886 63.0
DCAR_014578 Daucus carota HOM05D004758 ORTHO05D006063 1.2e-217 760.8 930 60.5
Cfa016059 Carpinus fangiana HOM05D004758 ORTHO05D006063 1.6e-217 760.4 876 64.7
Carub.0006s1497 Capsella rubella HOM05D004758 ORTHO05D006063 2.6e-217 759.6 865 63.1
SalBow4G2121 Salvia bowleyana HOM05D004758 ORTHO05D006063 5.9e-217 758.4 900 65.4
SalBow4G2875 Salvia bowleyana HOM05D004758 ORTHO05D006063 5.9e-217 758.4 900 65.4
ECA236G2519 Erigeron canadensis HOM05D004758 ORTHO05D006063 1.3e-216 757.3 870 63.2
AT5G16750 Arabidopsis thaliana HOM05D004758 ORTHO05D006063 2.9e-216 756.1 876 62.1
Thhalv10012644m.g Eutrema salsugineum HOM05D004758 ORTHO05D006063 2.1e-214 750.0 877 61.9
CSS0042937 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 2.7e-214 749.6 790 66.8
Lalb_Chr12g0201611 Lupinus albus HOM05D004758 ORTHO05D006063 3.6e-214 749.2 911 61.0
BolC2t06772H Brassica oleracea HOM05D004758 ORTHO05D006063 1.0e-213 747.7 818 64.2
EL10Ac1g01635 Beta vulgaris HOM05D004758 ORTHO05D006063 3.0e-213 746.1 812 54.2
Lj4g0021664 Lotus japonicus HOM05D004758 ORTHO05D006063 3.0e-213 746.1 876 62.3
BolC9t58865H Brassica oleracea HOM05D004758 ORTHO05D006063 4.0e-213 745.7 867 61.8
CARHR196430 Cardamine hirsuta HOM05D004758 ORTHO05D006063 4.0e-213 745.7 862 62.2
Sp6g27370 Schrenkiella parvula HOM05D004758 ORTHO05D006063 4.0e-213 745.7 863 61.3
BcaC03g18515 Brassica carinata HOM05D004758 ORTHO05D006063 6.8e-213 745.0 818 64.2
HanXRQChr04g0115571 Helianthus annuus HOM05D004758 ORTHO05D006063 6.8e-213 745.0 868 61.2
C02p08570 Brassica napus HOM05D004758 ORTHO05D006063 1.2e-212 744.2 862 62.5
BraA10t44306Z Brassica rapa HOM05D004758 ORTHO05D006063 1.3e-211 740.7 862 61.6
A10p22470 Brassica napus HOM05D004758 ORTHO05D006063 1.7e-211 740.3 862 61.6
TPR.G37444 Trifolium pratense HOM05D004758 ORTHO05D006063 2.2e-211 740.0 913 62.2
arahy.Tifrunner.gnm1.ann1.MVA0XP Arachis hypogaea HOM05D004758 ORTHO05D006063 3.7e-211 739.2 896 61.4
MSTRG.26923 Avicennia marina HOM05D004758 ORTHO05D006063 3.7e-211 739.2 889 66.6
A02p03760 Brassica napus HOM05D004758 ORTHO05D006063 3.7e-211 739.2 836 63.0
BraA02t05341Z Brassica rapa HOM05D004758 ORTHO05D006063 3.7e-211 739.2 836 63.0
BcaC04g18853 Brassica carinata HOM05D004758 ORTHO05D006063 1.4e-210 737.3 867 62.1
C09p60320 Brassica napus HOM05D004758 ORTHO05D006063 1.4e-210 737.3 862 61.8
PSO063G1271 Papaver somniferum HOM05D004758 ORTHO05D006063 7.0e-210 734.9 875 65.4
Sc02g0003740 Simmondsia chinensis HOM05D004758 ORTHO05D006063 5.0e-208 728.8 886 60.9
Nitab4.5_0000108g0370 Nicotiana tabacum HOM05D004758 ORTHO05D006063 8.5e-208 728.0 867 63.0
CANSAT21G1832 Cannabis sativa HOM05D004758 ORTHO05D006063 1.9e-207 726.9 875 65.7
MD01G1236400 Malus domestica HOM05D004758 ORTHO05D006063 3.2e-207 726.1 868 65.0
Lj3C885T17 Lonicera japonica HOM05D004758 ORTHO05D006063 9.4e-207 724.5 884 64.0
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 3.0e-205 719.5 806 62.9
Ah.05g168380 Amaranthus hybridus HOM05D004758 ORTHO05D006063 1.5e-204 717.2 898 56.6
vmacro06528 Vaccinium macrocarpon HOM05D004758 ORTHO05D006063 3.4e-204 716.1 923 60.0
Ciclev10018804m.g Citrus clementina HOM05D004758 ORTHO05D006063 3.1e-202 709.5 879 60.0
Lsat_1_v5_gn_7_26400 Lactuca sativa HOM05D004758 ORTHO05D006063 5.0e-200 702.2 814 61.3
FAN10G3249 Fragaria x ananassa HOM05D004758 ORTHO05D006063 3.3e-199 699.5 865 61.6
Solyc03g097160.4 Solanum lycopersicum HOM05D004758 ORTHO05D006063 9.5e-199 698.0 869 63.4
CAN.G1131.26 Capsicum annuum HOM05D004758 ORTHO05D006063 1.2e-198 697.6 920 62.3
Zm00001eb072270 Zea mays HOM05D004758 ORTHO05D006063 2.1e-198 696.8 892 61.5
Peaxi162Scf00516g00672 Petunia axillaris HOM05D004758 ORTHO05D006063 6.1e-198 695.3 869 60.6
SGA_v2.0_scaffold18G08524 Striga asiatica HOM05D004758 ORTHO05D006063 1.8e-197 693.7 930 59.8
COL.COLO4_14499 Corchorus olitorius HOM05D004758 ORTHO05D006063 1.2e-196 691.0 892 58.1
Ca_21920_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 2.2e-195 686.8 767 66.9
HPP92_020800 Vanilla planifolia HOM05D004758 ORTHO05D006063 1.8e-194 683.7 895 57.3
FAN01G1935 Fragaria x ananassa HOM05D004758 ORTHO05D006063 3.2e-194 682.9 806 61.2
arahy.Tifrunner.gnm1.ann1.64XA74 Arachis hypogaea HOM05D004758 ORTHO05D006063 9.2e-194 681.4 870 60.0
Os04g0592700 Oryza sativa ssp. japonica HOM05D004758 ORTHO05D006063 1.6e-190 670.6 898 60.8
Nitab4.5_0004530g0070 Nicotiana tabacum HOM05D004758 ORTHO05D006063 3.1e-189 666.4 869 58.8
PSO782G4173 Papaver somniferum HOM05D004758 ORTHO05D006063 5.2e-189 665.6 870 63.1
Sopen03g027900 Solanum pennellii HOM05D004758 ORTHO05D006063 4.9e-187 659.1 869 61.8
unitig_748.g6995 Utricularia gibba HOM05D004758 ORTHO05D006063 2.2e-179 633.6 875 60.6
FAN03G1445 Fragaria x ananassa HOM05D004758 ORTHO05D006063 1.2e-177 627.9 806 62.2
Glyma.17G089100 Glycine max HOM05D004758 ORTHO05D006063 2.5e-175 620.2 709 65.4
Cc08_g01720 Coffea canephora HOM05D004758 ORTHO05D006063 3.2e-170 603.2 658 65.2
BcaC03g18514 Brassica carinata HOM05D004758 ORTHO05D006063 1.9e-167 594.0 670 62.1
Lalb_Chr13g0297781 Lupinus albus HOM05D004758 ORTHO05D006063 3.3e-167 593.2 666 63.1
RcHm_v2.0_Chr1g0384251 Rosa chinensis HOM05D004758 ORTHO05D006063 3.3e-167 593.2 665 62.4
Eucgr.K00076 Eucalyptus grandis HOM05D004758 ORTHO05D006063 2.6e-164 583.6 529 69.0
Glyma.05G038000 Glycine max HOM05D004758 ORTHO05D006063 2.7e-161 573.5 534 62.4
Nitab4.5_0000021g0710 Nicotiana tabacum HOM05D004758 ORTHO05D006063 2.3e-160 570.5 842 55.5
Potri.019G047300 Populus trichocarpa HOM05D004758 ORTHO05D006063 1.7e-152 544.3 598 69.1
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 1.4e-149 534.6 859 49.1
Cpa.g.sc43.121 Carica papaya HOM05D004758 ORTHO05D006063 4.0e-149 533.1 455 66.2
Atru.chr10.1077 Acer truncatum HOM05D004758 ORTHO05D006063 3.4e-148 530.0 567 68.4
SMO358G0628 Selaginella moellendorffii HOM05D004758 ORTHO05D006063 1.5e-143 514.6 813 49.9
Zm00001eb429930 Zea mays HOM05D004758 ORTHO05D006063 1.3e-142 511.5 547 60.0
Mapoly0155s0010 Marchantia polymorpha HOM05D004758 ORTHO05D006063 4.0e-141 506.5 843 52.6
CBR_g29896 Chara braunii HOM05D004758 ORTHO05D006063 1.9e-130 471.1 843 40.9
SEGI_30407 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 2.7e-129 467.2 460 56.1
Aa31LG11G12810 Aethionema arabicum HOM05D004758 ORTHO05D006063 5.1e-128 463.0 678 52.8
CSS0032843 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 1.4e-109 401.7 436 58.3
Cre07.g344050 Chlamydomonas reinhardtii HOM05D004758 ORTHO05D006063 8.8e-96 355.9 916 40.1
Atru.chr10.1076 Acer truncatum HOM05D004758 ORTHO05D006063 6.6e-75 286.6 277 73.6
AUR62013587 Chenopodium quinoa HOM05D004758 ORTHO05D006063 2.1e-65 255.0 335 44.8
SEGI_23303 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 1.6e-57 228.8 372 61.0
HanXRQChr15g0491711 Helianthus annuus HOM05D004758 ORTHO05D006063 6.8e-56 223.4 190 61.6
Eucgr.K00075 Eucalyptus grandis HOM05D004758 ORTHO05D006063 2.0e-55 221.9 227 57.7
ECA236G3818 Erigeron canadensis HOM05D004758 ORTHO05D006063 6.0e-52 210.3 306 41.5
Cc08_g01710 Coffea canephora HOM05D004758 ORTHO05D006063 1.3e-51 209.1 217 74.7
Cpa.g.sc43.118 Carica papaya HOM05D004758 ORTHO05D006063 1.1e-50 206.1 145 69.0
HanXRQChr12g0362941 Helianthus annuus HOM05D004758 ORTHO05D006063 1.1e-50 206.1 162 67.9
FAN06G1039 Fragaria x ananassa HOM05D004758 ORTHO05D006063 1.2e-47 196.1 149 59.7
MCO16G091 Micromonas commoda HOM05D004758 ORTHO05D006063 9.9e-47 193.0 889 32.1
Zm00001eb153310 Zea mays HOM05D004758 ORTHO05D006063 1.2e-44 186.0 182 54.4
Actinidia34322 Actinidia chinensis HOM05D004758 ORTHO05D006063 8.7e-43 179.9 134 63.4
Lalb_Chr13g0297791 Lupinus albus HOM05D004758 ORTHO05D006063 9.6e-42 176.4 211 61.6
Cfa027159 Carpinus fangiana HOM05D004758 ORTHO05D006063 4.0e-40 171.0 934 21.8
PGSC0003DMG400013158 Solanum tuberosum HOM05D004758 ORTHO05D006063 9.0e-40 169.9 376 33.5
PRCOL_00002697 Prasinoderma coloniale HOM05D004758 ORTHO05D006063 4.2e-37 161.0 529 43.3
MD01G1069700 Malus domestica HOM05D004758 ORTHO05D000275 1.6e-36 159.1 110 68.2
RcHm_v2.0_Chr1g0384241 Rosa chinensis HOM05D004758 ORTHO05D006063 1.1e-34 152.9 204 57.4
Lj3A886T35 Lonicera japonica HOM05D004758 ORTHO05D006063 3.4e-31 141.4 88 76.1
BcaNung04954 Brassica carinata HOM05D004758 ORTHO05D006063 7.6e-31 140.2 95 69.5
FAN01G1276 Fragaria x ananassa HOM05D004758 ORTHO05D006063 2.2e-30 138.7 103 61.2
SHI02547 Sapria himalayana HOM05D004758 ORTHO05D006063 4.9e-30 137.5 98 65.3
AUR62013586 Chenopodium quinoa HOM05D004758 ORTHO05D006063 5.6e-26 124.0 80 75.0
FAN01G2473 Fragaria x ananassa HOM05D004758 ORTHO05D006063 9.0e-24 116.7 84 59.5
Aa31sc12G110 Aethionema arabicum HOM05D004758 ORTHO05D006063 1.1e-21 109.8 162 45.1
PGSC0003DMG401003900 Solanum tuberosum HOM05D004758 ORTHO05D006063 4.2e-21 107.8 92 59.8
HanXRQChr15g0491701 Helianthus annuus HOM05D004758 ORTHO05D006063 6.9e-16 90.5 55 80.0
HPP92_020701 Vanilla planifolia HOM05D004758 ORTHO05D006063 4.5e-15 87.8 203 33.5
Ca_21928_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 7.6e-15 87.0 99 57.6
Psat6g059000 Pisum sativum HOM05D002708 ORTHO05D003516 3.3e-10 71.6 43 79.1
MELO3C034796.2 Cucumis melo HOM05D009856 ORTHO05D168594 3.4e-07 61.6 59 54.2
Psat0s3292g0040 Pisum sativum HOM05D000344 ORTHO05D001967 2.9e-06 58.5 40 65.0


User provided reference genes

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