Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.0e-126 456.8 242 100.0
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 1.1e-101 373.6 246 79.3
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 2.0e-98 362.8 242 77.3
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 3.4e-98 362.1 242 80.2
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 6.6e-94 347.8 241 74.3
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 2.5e-93 345.9 237 75.1
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 2.5e-93 345.9 242 75.6
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 3.3e-93 345.5 242 76.4
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 7.3e-93 344.4 243 72.8
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 7.3e-93 344.4 243 74.1
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 4.7e-92 341.7 242 74.0
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 1.1e-91 340.5 242 73.1
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 4.0e-91 338.6 238 75.6
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 5.2e-91 338.2 242 73.1
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 6.8e-91 337.8 245 72.7
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 2.0e-90 336.3 242 73.6
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 2.6e-90 335.9 240 72.5
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 7.6e-90 334.3 242 72.7
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 9.9e-90 334.0 242 72.3
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.7e-89 333.2 242 71.9
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 1.7e-89 333.2 242 72.7
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.7e-89 333.2 242 73.1
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 4.9e-89 331.6 242 72.3
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 8.4e-89 330.9 243 71.2
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 1.4e-88 330.1 240 70.0
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.9e-88 329.7 242 70.7
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.4e-88 329.3 243 72.0
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 2.4e-88 329.3 243 71.2
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 4.2e-88 328.6 242 71.1
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 5.4e-88 328.2 242 71.1
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 5.4e-88 328.2 242 70.2
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 5.4e-88 328.2 242 70.2
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 7.1e-88 327.8 249 69.1
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 7.1e-88 327.8 242 71.5
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 9.3e-88 327.4 242 70.7
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 1.2e-87 327.0 242 72.3
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 3.5e-87 325.5 241 70.1
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.5e-87 325.5 243 72.0
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 4.6e-87 325.1 228 75.0
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.6e-87 325.1 243 72.0
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 4.6e-87 325.1 243 69.1
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 6.0e-87 324.7 242 70.2
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 7.8e-87 324.3 243 71.6
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 7.8e-87 324.3 243 71.6
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 7.8e-87 324.3 243 70.0
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 7.8e-87 324.3 241 69.7
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.0e-86 323.9 243 70.8
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 1.0e-86 323.9 242 69.8
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 1.0e-86 323.9 241 68.9
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.3e-86 323.6 242 71.1
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 1.3e-86 323.6 240 70.0
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 1.7e-86 323.2 242 70.2
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 1.7e-86 323.2 252 69.0
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 2.3e-86 322.8 242 70.7
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 2.3e-86 322.8 243 68.7
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 2.3e-86 322.8 242 69.0
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 3.0e-86 322.4 241 70.1
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 3.9e-86 322.0 241 69.3
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 5.1e-86 321.6 242 70.7
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 6.6e-86 321.2 241 69.3
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 8.7e-86 320.9 243 70.0
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 1.5e-85 320.1 241 69.3
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.5e-85 320.1 243 71.2
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.9e-85 319.7 243 68.7
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 3.3e-85 318.9 228 73.7
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 3.3e-85 318.9 241 69.3
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.6e-84 316.6 242 69.0
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.1e-84 316.2 242 68.2
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.8e-84 315.8 227 72.2
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 2.8e-84 315.8 241 68.9
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 8.1e-84 314.3 242 66.9
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 8.1e-84 314.3 241 68.9
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 8.1e-84 314.3 242 68.2
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.1e-83 313.9 241 67.6
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.1e-83 313.9 241 67.6
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 1.4e-83 313.5 241 67.6
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.4e-83 313.5 243 68.3
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 3.1e-83 312.4 242 68.6
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 4.0e-83 312.0 226 72.6
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 5.3e-83 311.6 242 69.0
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 6.9e-83 311.2 241 69.3
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 1.5e-82 310.1 236 68.6
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.0e-82 309.7 243 65.4
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.4e-82 308.5 243 66.3
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 7.6e-82 307.8 232 69.0
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 7.6e-82 307.8 241 65.6
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 7.6e-82 307.8 243 67.5
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 9.9e-82 307.4 243 67.9
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 9.9e-82 307.4 206 76.2
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.3e-81 307.0 243 66.3
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 3.8e-81 305.4 245 67.8
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 3.8e-81 305.4 199 78.4
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 8.4e-81 304.3 241 66.4
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 3.2e-80 302.4 244 66.4
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 4.2e-80 302.0 206 75.7
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 9.3e-80 300.8 243 66.7
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 1.6e-79 300.1 209 74.2
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.5e-79 298.9 243 66.3
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.5e-79 298.9 241 64.3
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 4.6e-79 298.5 199 76.4
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 6.0e-79 298.1 241 63.5
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 3.0e-78 295.8 205 74.6
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 5.1e-78 295.0 244 64.3
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.5e-77 293.5 244 63.9
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 1.5e-77 293.5 210 74.8
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.5e-77 293.5 244 63.9
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 4.3e-77 292.0 243 63.8
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 5.6e-77 291.6 244 64.3
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 7.3e-77 291.2 244 63.5
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.6e-76 290.0 244 63.9
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.1e-75 287.3 194 75.3
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 1.4e-75 287.0 244 62.3
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 2.4e-75 286.2 201 73.1
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 4.0e-75 285.4 231 63.6
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 4.0e-75 285.4 231 63.6
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 4.0e-75 285.4 205 69.8
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 9.9e-74 280.8 231 62.8
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 9.9e-74 280.8 231 62.8
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 1.7e-73 280.0 238 62.6
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 1.1e-72 277.3 205 70.2
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.2e-72 275.8 178 78.1
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 9.3e-72 274.2 229 64.6
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 2.7e-71 272.7 227 63.4
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 1.1e-69 267.3 183 74.3
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 9.3e-64 247.7 198 63.6
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 6.2e-60 235.0 244 55.7
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 5.8e-58 228.4 191 66.5
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 5.5e-56 221.9 216 58.8
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 7.9e-55 218.0 157 71.3
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 1.4e-51 207.2 170 67.1
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 1.3e-44 184.1 133 69.2
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.5e-42 177.2 242 49.2
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 4.5e-42 175.6 111 75.7
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 1.4e-38 164.1 176 52.3
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 2.8e-36 156.4 173 50.3
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 1.2e-34 151.0 105 70.5
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 1.5e-32 144.1 130 62.3
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 2.0e-26 123.6 185 39.5
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 1.6e-23 114.0 86 60.5
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 8.8e-22 108.2 91 67.0
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 2.6e-21 106.7 90 67.8
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 5.7e-21 105.5 190 33.7
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 5.5e-16 89.0 56 78.6
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 2.3e-14 83.6 193 30.6
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 1.8e-11 73.9 79 58.2
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.2e-10 71.2 62 66.1
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 2.3e-09 67.0 82 50.0
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 3.8e-09 66.2 54 68.5


User provided reference genes

Program Settings