Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 1.2e-206 723.4 426 100.0
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 2.8e-139 499.6 433 65.6
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.5e-137 493.8 429 68.3
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 1.5e-137 493.8 434 65.9
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 9.9e-137 491.1 444 65.5
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 1.9e-135 486.9 431 62.6
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 3.5e-134 482.6 424 66.3
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 4.6e-134 482.3 429 65.3
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 4.6e-134 482.3 430 64.4
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 4.6e-134 482.3 432 63.7
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 2.3e-133 479.9 430 69.8
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 3.0e-133 479.6 432 62.7
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 3.0e-133 479.6 430 71.4
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 5.1e-133 478.8 434 63.8
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 8.7e-133 478.0 435 64.1
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 1.1e-132 477.6 430 67.4
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 1.9e-132 476.9 430 66.0
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 9.6e-132 474.6 429 66.9
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 1.3e-131 474.2 415 69.9
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 2.1e-131 473.4 430 67.4
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 2.1e-131 473.4 430 67.9
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 2.1e-131 473.4 430 62.8
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 2.8e-131 473.0 435 71.3
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 4.8e-131 472.2 432 64.6
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 8.1e-131 471.5 327 75.2
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.1e-130 471.1 432 63.7
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 2.4e-130 469.9 430 64.7
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.5e-129 467.2 324 74.7
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 3.8e-128 462.6 442 66.1
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 6.4e-128 461.8 431 64.7
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 8.4e-128 461.5 440 59.8
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 1.4e-127 460.7 418 64.4
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 1.4e-127 460.7 429 62.5
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 3.2e-127 459.5 431 67.7
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 3.2e-127 459.5 432 59.0
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 9.3e-127 458.0 441 60.3
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 9.3e-127 458.0 439 58.5
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 1.2e-126 457.6 334 71.6
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 2.7e-126 456.4 438 61.0
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 1.0e-125 454.5 428 65.7
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 3.9e-125 452.6 430 62.3
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 5.1e-125 452.2 430 63.7
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 5.1e-125 452.2 450 57.1
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 2.5e-124 449.9 330 70.0
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 7.4e-124 448.4 432 60.2
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 1.3e-123 447.6 332 69.9
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 2.1e-123 446.8 431 58.9
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 4.8e-123 445.7 423 62.4
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 1.1e-122 444.5 446 65.5
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 6.9e-122 441.8 442 64.9
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 2.6e-121 439.9 420 67.4
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.2e-120 436.8 421 61.8
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 8.4e-120 434.9 438 62.6
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 1.1e-119 434.5 483 53.8
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 1.9e-119 433.7 441 65.3
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 5.5e-119 432.2 429 62.0
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 1.2e-118 431.0 330 70.0
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 7.9e-118 428.3 431 59.2
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 3.9e-117 426.0 457 60.4
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 3.9e-117 426.0 447 60.4
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 6.7e-117 425.2 431 58.7
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 1.1e-116 424.5 432 62.0
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 7.4e-116 421.8 435 59.8
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 9.6e-116 421.4 405 62.0
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 1.3e-115 421.0 399 63.7
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 4.8e-115 419.1 432 59.0
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 1.4e-114 417.5 438 62.1
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 2.4e-114 416.8 456 55.3
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 1.0e-112 411.4 455 59.1
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 3.8e-112 409.5 310 67.1
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 2.5e-111 406.8 398 65.3
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 3.2e-111 406.4 340 64.7
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 3.2e-111 406.4 329 65.7
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 1.6e-110 404.1 436 58.7
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 1.3e-109 401.0 436 62.6
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 1.8e-109 400.6 436 62.8
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 1.9e-108 397.1 438 58.2
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 1.6e-107 394.0 332 64.2
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 8.2e-107 391.7 398 59.8
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.1e-106 391.3 296 69.6
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 5.3e-106 389.0 448 55.8
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 5.3e-106 389.0 448 55.6
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 5.9e-105 385.6 301 68.4
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.9e-103 380.6 423 60.8
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.9e-103 380.6 381 64.0
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 4.2e-103 379.4 366 57.7
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.8e-101 374.0 398 59.3
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 3.9e-101 372.9 439 60.1
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 8.8e-101 371.7 381 62.2
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 2.6e-100 370.2 442 57.9
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 2.6e-100 370.2 297 68.4
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 3.3e-100 369.8 326 61.7
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 7.4e-100 368.6 589 42.4
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 5.3e-98 362.5 436 59.2
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 5.3e-98 362.5 433 58.4
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 3.2e-95 353.2 275 68.0
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 4.7e-94 349.4 435 49.7
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 1.4e-93 347.8 433 49.7
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 1.8e-93 347.4 447 49.2
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 1.8e-93 347.4 230 76.1
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 3.9e-93 346.3 441 49.9
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 2.8e-91 340.1 363 64.5
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 1.8e-90 337.4 260 68.8
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 9.1e-90 335.1 425 51.5
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 1.7e-88 330.9 453 47.2
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 1.7e-88 330.9 453 47.2
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 2.9e-88 330.1 368 54.6
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 2.1e-86 323.9 342 53.8
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 1.4e-82 311.2 423 51.8
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 4.1e-82 309.7 312 53.2
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 1.3e-80 304.7 251 63.7
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 1.5e-79 301.2 366 53.0
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 7.0e-74 282.3 446 43.7
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 3.2e-71 273.5 340 48.5
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 2.7e-65 253.8 333 45.6
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 1.1e-63 248.4 400 46.2
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 5.6e-63 246.1 246 55.7
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.4e-61 241.5 228 53.1
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 2.0e-57 227.6 349 41.0
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.7e-56 224.6 193 57.0
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 1.1e-50 205.3 300 42.3
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 6.0e-41 172.9 285 37.5
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 1.5e-39 168.3 204 52.9
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 1.4e-34 151.8 195 50.8
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 3.0e-24 117.5 146 50.0
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 8.7e-24 115.9 73 75.3
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 1.5e-23 115.2 146 49.3
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 1.5e-23 115.2 146 49.3
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 6.7e-16 89.7 255 26.3
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.9e-15 88.2 84 56.0
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 5.8e-12 76.6 95 51.6
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 5.8e-12 76.6 95 51.6
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 8.4e-11 72.8 84 53.6
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 9.3e-10 69.3 330 22.4
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 7.9e-09 66.2 109 45.0
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 7.9e-09 66.2 164 31.7
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 1.5e-07 62.0 96 47.9
Lalb_Chr05g0213591 Lupinus albus HOM05D005480 ORTHO05D006735 1.6e-06 58.5 36 77.8


User provided reference genes

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