Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 0.0e+00 2341.2 1171 100.0
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 2.9e-227 793.1 1222 42.7
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 3.1e-221 773.1 1243 41.8
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.3e-190 671.4 1231 39.3
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.4e-184 651.4 1209 37.8
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 1.8e-181 641.0 1178 39.0
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 7.2e-178 629.0 1179 38.8
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.4e-173 614.8 1224 36.4
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 2.9e-155 553.9 1183 35.6
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 2.3e-147 527.7 1193 35.3
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 1.0e-139 502.3 1191 32.9
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 1.1e-136 492.3 1186 33.1
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 3.7e-134 483.8 1166 33.4
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.4e-133 481.9 1181 33.2
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.6e-132 478.4 1167 32.6
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 6.0e-132 476.5 1178 33.6
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 9.5e-130 469.2 1177 32.5
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 3.6e-129 467.2 1184 31.7
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 2.4e-125 454.5 1141 32.7
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.2e-124 452.2 1187 31.0
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 7.8e-124 449.5 1166 32.2
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.9e-123 447.2 1185 31.8
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.4e-120 438.7 1182 31.0
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 5.2e-120 436.8 1187 31.2
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 7.8e-116 422.9 1190 32.1
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 1.0e-115 422.5 1144 32.0
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 2.3e-115 421.4 1196 31.4
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.5e-114 418.7 1185 31.0
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 1.9e-114 418.3 1134 31.2
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 3.1e-112 411.0 1183 30.9
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 3.4e-111 407.5 1179 30.5
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.4e-109 402.1 1175 30.6
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 1.2e-108 399.1 1136 30.4
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 6.0e-108 396.7 1175 31.1
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.7e-107 395.2 1193 30.5
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 3.0e-107 394.4 1196 30.5
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 8.7e-107 392.9 1151 31.1
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 2.5e-106 391.3 1167 32.1
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 2.5e-106 391.3 1160 31.0
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.3e-105 389.0 1188 30.5
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 4.8e-105 387.1 1169 29.6
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.1e-104 386.0 1183 28.9
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 2.0e-103 381.7 1181 30.6
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 2.6e-103 381.3 1174 29.5
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 1.9e-101 375.2 1161 28.5
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 3.2e-101 374.4 1148 31.9
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 5.4e-101 373.6 1151 31.0
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 1.2e-100 372.5 1162 28.8
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.5e-100 370.9 1205 29.8
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 3.0e-99 367.9 1185 29.0
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 1.5e-98 365.5 1168 30.2
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 1.3e-97 362.5 1157 30.5
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.8e-97 360.5 1169 29.9
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 1.1e-96 359.4 1162 27.9
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 2.6e-95 354.8 1168 28.7
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.9e-93 348.6 906 31.8
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 9.3e-93 346.3 1140 27.8
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 6.0e-92 343.6 568 39.8
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 1.1e-90 339.3 1164 27.9
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 1.5e-90 339.0 868 32.6
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 7.4e-90 336.7 1176 27.9
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 9.0e-88 329.7 1170 28.5
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 5.1e-83 313.9 1179 27.5
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 8.7e-83 313.2 1173 28.5
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 4.8e-81 307.4 1179 27.7
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.4e-80 305.8 1194 26.8
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 3.1e-80 304.7 1162 27.7
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 6.9e-80 303.5 1170 28.1
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 6.9e-80 303.5 1158 28.1
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 1.5e-79 302.4 1180 26.6
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.0e-78 299.7 1160 27.2
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 7.2e-77 293.5 1167 27.2
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 3.9e-75 287.7 1160 28.0
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 3.7e-73 281.2 835 30.9
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 6.3e-73 280.4 1173 27.5
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 7.7e-71 273.5 1162 26.0
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 1.0e-70 273.1 857 29.5
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 2.5e-69 268.5 1166 25.4
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 9.4e-69 266.5 1155 27.0
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.8e-67 262.3 803 29.1
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 4.8e-65 254.2 834 29.3
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 8.2e-65 253.4 866 28.6
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 7.7e-63 246.9 766 30.5
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 3.8e-62 244.6 831 28.2
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 9.4e-61 240.0 1153 25.5
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 2.7e-60 238.4 794 28.0
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 2.7e-60 238.4 794 28.0
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 2.7e-60 238.4 794 28.0
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 1.5e-58 232.6 781 29.2
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 1.7e-57 229.2 781 28.9
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 3.7e-57 228.0 738 27.0
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 3.2e-53 214.9 744 27.6
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 7.0e-48 197.2 173 56.1
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.9e-46 191.8 348 35.6
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 5.0e-46 191.0 366 33.6
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 5.5e-45 187.6 380 35.0
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 3.0e-43 181.8 484 31.0
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 5.2e-43 181.0 747 28.0
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.7e-41 174.9 164 53.0
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 4.7e-36 157.9 346 32.4
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 1.0e-35 156.8 324 30.2
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 8.3e-33 147.1 672 26.6
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.1e-32 146.7 468 29.7
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 3.2e-32 145.2 545 29.0
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 9.2e-32 143.7 139 51.1
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.0e-31 142.5 164 46.3
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 4.6e-31 141.4 180 45.0
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 5.9e-31 141.0 720 27.2
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 7.8e-31 140.6 473 30.9
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 6.6e-30 137.5 854 23.9
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 8.6e-30 137.1 177 42.4
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 1.9e-29 136.0 158 46.2
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 2.1e-28 132.5 150 46.0
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.6e-28 131.7 166 44.6
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 4.0e-27 128.3 141 47.5
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 2.0e-26 125.9 129 49.6
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 4.4e-26 124.8 238 35.7
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 3.7e-25 121.7 356 27.8
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 1.2e-23 116.7 334 26.3
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 7.8e-23 114.0 263 32.3
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 1.3e-22 113.2 161 41.0
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.1e-21 110.2 434 27.0
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.1e-21 110.2 331 26.0
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 9.5e-21 107.1 128 43.8
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.6e-20 106.3 344 25.9
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 8.1e-20 104.0 853 22.9
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 1.8e-19 102.8 146 43.2
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 2.0e-18 99.4 826 23.5
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 4.9e-17 94.7 92 52.2
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 6.4e-17 94.4 829 22.9
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 1.4e-16 93.2 739 21.9
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 4.1e-16 91.7 136 44.9
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 1.5e-13 83.2 841 22.4
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 3.3e-13 82.0 63 57.1
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 2.3e-11 75.9 87 47.1
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.3e-09 70.1 207 27.5
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 1.3e-09 70.1 63 50.8
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 2.4e-08 65.9 157 31.2
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 2.4e-08 65.9 92 40.2
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 3.2e-08 65.5 158 32.9
SMO205G0005 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 3.2e-08 65.5 74 37.8
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 1.6e-07 63.2 524 23.5
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 2.1e-07 62.8 97 42.3
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 1.3e-06 60.1 516 22.3


User provided reference genes

Program Settings