Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G01165 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 1.1e-44 183.0 92 100.0
Aqoxy5G03430 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 8.8e-39 163.3 91 87.9
Aqoxy6G00957 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 2.6e-35 151.8 93 86.0
Aqoxy1G02836 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 2.5e-33 145.2 92 83.7
Aqoxy7G00613 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 2.5e-33 145.2 92 83.7
Aqoxy7G00614 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 1.2e-32 142.9 92 81.5
Aqoxy1G02838 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 2.4e-20 102.1 52 94.2
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 6.5e-18 94.0 88 60.2
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 6.5e-18 94.0 88 60.2
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 6.5e-18 94.0 88 60.2
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 8.5e-18 93.6 88 60.2
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 8.5e-18 93.6 88 60.2
Atru.chr7.2125 Acer truncatum HOM05D003084 ORTHO05D003580 8.5e-18 93.6 88 60.2
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 8.5e-18 93.6 88 60.2
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 8.5e-18 93.6 89 59.6
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 8.5e-18 93.6 88 60.2
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 8.5e-18 93.6 88 60.2
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 8.5e-18 93.6 88 60.2
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 8.5e-18 93.6 88 60.2
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 8.5e-18 93.6 88 60.2
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 8.5e-18 93.6 88 60.2
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 8.5e-18 93.6 88 60.2
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 8.5e-18 93.6 88 60.2
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 8.5e-18 93.6 88 60.2
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 8.5e-18 93.6 88 60.2
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 8.5e-18 93.6 89 58.4
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 8.5e-18 93.6 88 60.2
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 60.2
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 60.2
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 59.1
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 59.1
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 60.2
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 60.2
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 59.1
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 60.2
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 60.2
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 60.2
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 60.2
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 60.2
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 60.2
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 60.2
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 60.2
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 60.2
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 60.2
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 60.2
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 1.1e-17 93.2 88 60.2
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 1.5e-17 92.8 89 58.4
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 1.5e-17 92.8 88 60.2
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 1.5e-17 92.8 88 60.2
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 1.5e-17 92.8 88 60.2
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 1.5e-17 92.8 88 60.2
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 1.5e-17 92.8 88 60.2
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 1.5e-17 92.8 88 60.2
Os02g0478900 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.5e-17 92.8 88 60.2
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 1.9e-17 92.4 88 59.1
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 1.9e-17 92.4 89 58.4
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 1.9e-17 92.4 88 59.1
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 1.9e-17 92.4 88 59.1
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 1.9e-17 92.4 88 59.1
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 1.9e-17 92.4 88 60.2
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 1.9e-17 92.4 88 60.2
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 1.9e-17 92.4 89 58.4
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 1.9e-17 92.4 88 59.1
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 1.9e-17 92.4 88 59.1
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 1.9e-17 92.4 88 60.2
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 1.9e-17 92.4 88 60.2
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 1.9e-17 92.4 88 60.2
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 1.9e-17 92.4 88 59.1
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 1.9e-17 92.4 88 58.0
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.9e-17 92.4 88 59.1
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 1.9e-17 92.4 88 59.1
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 2.5e-17 92.0 88 60.2
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 2.5e-17 92.0 88 60.2
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 2.5e-17 92.0 88 59.1
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 2.5e-17 92.0 88 58.0
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 2.5e-17 92.0 88 58.0
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 2.5e-17 92.0 88 59.1
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 2.5e-17 92.0 88 60.2
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 2.5e-17 92.0 88 60.2
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 2.5e-17 92.0 88 59.1
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 2.5e-17 92.0 88 59.1
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 2.5e-17 92.0 88 60.2
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 2.5e-17 92.0 88 60.2
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 2.5e-17 92.0 88 60.2
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 2.5e-17 92.0 88 60.2
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 2.5e-17 92.0 88 59.1
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 3.2e-17 91.7 88 59.1
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 3.2e-17 91.7 88 59.1
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 3.2e-17 91.7 88 59.1
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 3.2e-17 91.7 88 58.0
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 4.2e-17 91.3 88 59.1
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 4.2e-17 91.3 88 59.1
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 4.2e-17 91.3 88 59.1
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 4.2e-17 91.3 88 59.1
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 4.2e-17 91.3 88 59.1
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 4.2e-17 91.3 88 59.1
HPP92_010359 Vanilla planifolia HOM05D003084 ORTHO05D003580 4.2e-17 91.3 88 58.0
HPP92_010409 Vanilla planifolia HOM05D003084 ORTHO05D003580 4.2e-17 91.3 88 58.0
ATR0307G103 Amborella trichopoda HOM05D003084 ORTHO05D003580 5.5e-17 90.9 88 59.1
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 5.5e-17 90.9 89 57.3
BcaB04g19963 Brassica carinata HOM05D003084 ORTHO05D003580 5.5e-17 90.9 89 57.3
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 5.5e-17 90.9 89 57.3
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 5.5e-17 90.9 89 57.3
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 5.5e-17 90.9 89 57.3
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 5.5e-17 90.9 89 57.3
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 5.5e-17 90.9 88 56.8
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 5.5e-17 90.9 89 57.3
HPP92_019915 Vanilla planifolia HOM05D003084 ORTHO05D003580 5.5e-17 90.9 88 58.0
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 5.5e-17 90.9 88 56.8
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 7.2e-17 90.5 88 58.0
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 7.2e-17 90.5 88 58.0
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 7.2e-17 90.5 88 58.0
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 7.2e-17 90.5 88 58.0
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 7.2e-17 90.5 88 59.1
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 7.2e-17 90.5 88 59.1
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 9.5e-17 90.1 88 56.8
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 9.5e-17 90.1 88 58.0
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 9.5e-17 90.1 88 56.8
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 1.2e-16 89.7 88 58.0
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 1.2e-16 89.7 88 58.0
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 1.6e-16 89.4 88 58.0
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 1.6e-16 89.4 88 58.0
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 1.6e-16 89.4 88 56.8
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 2.1e-16 89.0 88 58.0
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 2.1e-16 89.0 88 58.0
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 2.1e-16 89.0 88 58.0
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 2.1e-16 89.0 88 58.0
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 2.8e-16 88.6 89 55.1
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 3.6e-16 88.2 88 55.7
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 4.7e-16 87.8 89 56.2
HPP92_010380 Vanilla planifolia HOM05D003084 ORTHO05D003580 4.7e-16 87.8 88 56.8
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 6.1e-16 87.4 88 58.0
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 6.1e-16 87.4 88 58.0
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 8.0e-16 87.0 88 54.5
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 1.4e-15 86.3 88 56.8
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 1.4e-15 86.3 88 55.7
DCAR_017867 Daucus carota HOM05D003084 ORTHO05D003580 2.3e-15 85.5 88 54.5
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 3.0e-15 85.1 88 54.5
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 3.0e-15 85.1 88 53.4
FvH4_3g24440 Fragaria vesca HOM05D003084 ORTHO05D003580 3.0e-15 85.1 88 54.5
FAN11G1592 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.0e-15 85.1 88 54.5
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 1.2e-14 83.2 90 50.0
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 1.5e-14 82.8 91 53.8
DCAR_026292 Daucus carota HOM05D003084 ORTHO05D003580 2.0e-14 82.4 88 53.4
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 2.0e-14 82.4 88 53.4
FAN21G2367 Fragaria x ananassa HOM05D003084 ORTHO05D003580 2.6e-14 82.0 88 53.4
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 3.4e-14 81.6 89 50.6
RcHm_v2.0_Chr5g0043941 Rosa chinensis HOM05D003084 ORTHO05D003580 1.3e-13 79.7 84 54.8
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.7e-13 79.3 86 52.3
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 6.3e-13 77.4 89 49.4
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 8.3e-13 77.0 88 48.9
C03p62000 Brassica napus HOM05D003084 ORTHO05D003580 3.1e-12 75.1 90 47.8
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 3.1e-12 75.1 89 48.3
Actinidia38789 Actinidia chinensis HOM05D003084 ORTHO05D003580 4.1e-12 74.7 56 67.9
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 7.0e-12 73.9 90 47.8
DCAR_028101 Daucus carota HOM05D003084 ORTHO05D003580 6.6e-10 67.4 88 48.9
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.5e-09 66.2 89 44.9
Cfa022297 Carpinus fangiana HOM05D003084 ORTHO05D003580 2.5e-09 65.5 68 45.6
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 5.6e-09 64.3 89 44.9
DCAR_028103 Daucus carota HOM05D003084 ORTHO05D018407 1.4e-07 59.7 92 44.6
ATR0618G025 Amborella trichopoda HOM05D003084 ORTHO05D003580 1.8e-07 59.3 51 60.8
Dinv04118 Davidia involucrata HOM05D003084 ORTHO05D003580 1.8e-07 59.3 64 51.6
Rhsim09G0053300 Rhododendron simsii HOM05D003084 ORTHO05D003580 9.8e-06 53.5 40 70.0


User provided reference genes

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