Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 0.0e+00 1168.3 598 100.0
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.8e-286 988.8 602 83.7
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 5.0e-276 954.1 598 80.8
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 2.5e-275 951.8 600 79.8
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 7.2e-275 950.3 602 80.9
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 9.4e-275 949.9 602 79.7
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 3.0e-273 944.9 603 79.6
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 5.2e-273 944.1 603 79.9
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 1.5e-272 942.6 602 79.7
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 4.4e-272 941.0 626 78.3
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 5.7e-272 940.6 600 79.3
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.3e-271 939.5 589 81.3
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 1.3e-271 939.5 602 78.6
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.7e-271 937.9 603 78.9
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 3.7e-271 937.9 601 79.0
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 7.0e-270 933.7 593 78.6
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.2e-269 932.9 600 78.3
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 2.6e-269 931.8 597 79.2
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 2.9e-268 928.3 594 78.5
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 5.0e-268 927.5 601 78.0
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.9e-267 925.6 602 77.7
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 3.2e-267 924.9 603 77.6
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 7.2e-267 923.7 614 76.4
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 7.2e-267 923.7 602 77.4
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.7e-266 921.8 603 77.1
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 3.6e-266 921.4 593 78.6
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 6.1e-266 920.6 598 77.1
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.8e-265 919.1 606 76.7
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 5.2e-265 917.5 603 77.3
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 8.8e-265 916.8 593 78.1
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 1.2e-264 916.4 593 77.9
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 1.2e-264 916.4 601 77.7
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 2.8e-263 911.8 601 77.7
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 1.8e-262 909.1 593 77.4
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 2.4e-262 908.7 597 76.7
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.1e-262 908.3 602 76.6
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 3.1e-262 908.3 597 76.7
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 4.1e-262 907.9 601 77.5
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 5.4e-262 907.5 580 78.8
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 9.1e-262 906.7 596 77.7
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.0e-261 905.6 603 76.1
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 4.5e-261 904.4 581 78.0
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 1.0e-260 903.3 603 76.3
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.0e-260 903.3 601 76.5
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 1.3e-260 902.9 569 79.6
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 1.7e-260 902.5 603 76.3
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.9e-260 901.7 607 76.3
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 8.5e-260 900.2 618 75.4
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 1.1e-259 899.8 592 76.0
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.5e-259 899.4 601 76.4
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 1.9e-259 899.0 601 76.7
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.5e-259 898.7 601 76.2
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 2.5e-259 898.7 601 76.0
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 4.2e-259 897.9 605 76.2
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 5.5e-259 897.5 622 74.0
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.2e-258 896.3 650 71.7
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.6e-258 896.0 600 74.8
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.6e-258 896.0 600 74.8
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 2.3e-257 892.1 598 75.6
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 3.0e-257 891.7 603 74.1
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 5.2e-257 891.0 603 75.5
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 8.8e-257 890.2 602 73.4
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 1.2e-256 889.8 590 77.1
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 2.0e-256 889.0 622 74.3
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 2.6e-256 888.6 598 74.9
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 2.6e-256 888.6 600 75.3
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 5.7e-256 887.5 598 74.7
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 5.7e-256 887.5 598 74.7
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 5.7e-256 887.5 598 74.7
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 5.7e-256 887.5 598 74.7
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 7.5e-256 887.1 598 75.3
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 1.7e-255 885.9 575 77.6
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 2.2e-255 885.6 591 74.8
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 2.2e-255 885.6 603 74.0
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 1.1e-254 883.2 596 74.2
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 1.4e-254 882.9 601 74.7
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 2.4e-254 882.1 603 74.6
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 2.4e-254 882.1 603 73.8
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 3.1e-254 881.7 599 74.5
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 4.1e-254 881.3 596 75.0
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 5.4e-254 880.9 594 74.6
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 5.4e-254 880.9 659 69.7
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 2.0e-253 879.0 603 74.1
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 7.7e-253 877.1 603 73.6
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 1.0e-252 876.7 598 74.2
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 3.8e-252 874.8 603 74.0
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 1.1e-251 873.2 598 73.2
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 1.5e-251 872.8 598 74.4
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 2.5e-251 872.1 683 67.8
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 3.3e-251 871.7 594 74.7
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 7.2e-251 870.5 570 77.7
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 9.5e-251 870.2 603 73.1
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 1.2e-250 869.8 598 73.7
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.0e-249 866.7 601 75.5
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 2.9e-247 858.6 599 73.5
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.4e-246 856.3 553 77.9
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.4e-246 855.5 570 76.8
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 3.2e-246 855.1 596 73.5
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 1.5e-243 846.3 550 77.6
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 1.2e-242 843.2 597 72.7
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 2.8e-242 842.0 626 70.3
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 2.6e-240 835.5 548 76.3
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 6.0e-237 824.3 619 70.0
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 1.0e-236 823.5 563 74.2
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 2.1e-234 815.8 595 71.8
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 4.0e-233 811.6 504 81.0
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.0e-232 809.3 586 72.2
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.7e-231 805.1 586 72.0
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 1.6e-229 799.7 639 66.2
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 2.5e-227 792.3 657 62.4
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.1e-222 776.9 593 65.3
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 3.0e-220 768.8 598 65.7
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 8.6e-220 767.3 601 66.9
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 4.7e-218 761.5 478 81.0
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 6.4e-215 751.1 494 76.9
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 3.6e-210 735.3 477 77.8
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 7.1e-198 694.5 504 71.6
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.2e-192 677.2 544 66.5
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.6e-186 656.8 427 77.3
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 4.6e-181 638.6 442 73.5
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 4.1e-177 625.5 606 53.8
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 1.0e-175 620.9 570 55.1
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 2.3e-172 609.8 595 53.3
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 5.9e-160 568.5 437 65.2
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 3.7e-146 522.7 333 80.8
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 7.7e-144 515.0 605 47.3
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 1.1e-142 511.1 367 71.7
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 4.4e-139 499.2 418 61.0
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 6.3e-138 495.4 574 46.9
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.3e-127 461.1 288 81.2
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 8.0e-125 451.8 531 50.7
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.2e-123 448.0 332 69.6
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 3.3e-118 429.9 248 85.5
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.2e-115 421.4 437 54.9
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 5.8e-107 392.5 280 71.4
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.2e-101 374.8 318 63.8
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 4.2e-89 333.2 278 62.2
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 2.2e-74 284.3 661 31.5
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.9e-74 283.9 181 80.7
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 3.5e-72 276.9 567 34.0
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 1.4e-60 238.4 151 80.1
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 9.1e-60 235.7 153 77.8
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 2.0e-59 234.6 142 83.1
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.5e-46 191.8 147 68.7
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.8e-45 187.6 163 64.4
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 7.2e-41 172.9 613 26.3
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.2e-33 147.5 96 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 6.8e-31 139.8 116 56.9
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 7.5e-30 136.3 186 40.9
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 6.3e-29 133.3 98 69.4
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 4.2e-25 120.6 99 61.6
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.4e-23 115.5 66 81.8
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 1.5e-22 112.1 73 75.3
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 1.8e-20 105.1 626 23.6
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 4.5e-19 100.5 79 58.2
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 3.3e-17 94.4 67 62.7
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 3.3e-17 94.4 49 89.8
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 1.6e-16 92.0 48 89.6
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 6.8e-15 86.7 94 53.2
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 7.5e-14 83.2 72 51.4
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 8.3e-13 79.7 192 31.2
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 8.6e-10 69.7 61 60.7
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.1e-09 69.3 51 70.6
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 3.3e-09 67.8 51 68.6
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 8.0e-08 63.2 54 59.3


User provided reference genes

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