Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 1.3e-290 1002.7 619 100.0
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 4.2e-201 705.3 630 73.5
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 7.4e-198 694.5 632 72.2
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 1.3e-197 693.7 633 72.7
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 3.8e-194 682.2 632 70.3
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 3.6e-184 649.0 534 75.5
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.3e-181 640.6 633 71.4
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 3.1e-180 636.0 637 68.3
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 2.0e-179 633.3 636 67.9
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.0e-179 633.3 640 69.2
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 2.0e-179 633.3 640 69.2
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.9e-178 629.4 640 68.9
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 3.8e-178 629.0 635 68.3
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 2.1e-176 623.2 641 66.5
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 1.0e-175 620.9 637 70.6
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 1.5e-174 617.1 637 66.2
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 2.2e-173 613.2 635 67.7
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 7.7e-171 604.7 634 64.5
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.7e-170 603.6 556 67.8
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 7.2e-169 598.2 638 64.3
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 3.6e-168 595.9 635 63.8
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 7.9e-168 594.7 646 63.0
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 6.7e-167 591.7 690 59.7
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 2.6e-166 589.7 631 60.1
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 3.3e-166 589.3 628 62.6
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 8.2e-165 584.7 639 66.2
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 7.0e-164 581.6 656 61.3
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 1.7e-162 577.0 634 63.7
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 5.0e-162 575.5 501 71.9
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 8.5e-162 574.7 634 63.2
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 2.5e-161 573.2 534 64.8
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 4.2e-161 572.4 637 63.0
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.2e-160 570.9 557 60.5
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 1.2e-160 570.9 628 64.3
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 1.2e-158 564.3 629 57.6
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 2.0e-158 563.5 412 76.0
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 2.6e-158 563.1 655 63.4
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 1.7e-157 560.5 635 63.3
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 1.4e-156 557.4 634 63.2
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 1.8e-156 557.0 511 66.7
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 1.7e-154 550.4 660 62.0
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 2.9e-154 549.7 519 62.2
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 3.8e-154 549.3 635 59.4
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 1.1e-153 547.7 624 57.9
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 9.4e-153 544.7 557 64.8
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 3.6e-152 542.7 573 61.8
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 6.1e-152 542.0 511 68.5
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 8.0e-152 541.6 511 68.5
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 6.8e-151 538.5 640 57.7
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 6.8e-151 538.5 551 63.2
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 8.8e-151 538.1 632 64.2
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 1.5e-150 537.3 630 62.9
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 5.7e-150 535.4 635 58.9
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 7.5e-150 535.0 688 58.3
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 1.3e-149 534.3 629 60.6
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 2.2e-149 533.5 635 58.3
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 2.8e-149 533.1 525 67.4
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 6.3e-149 531.9 632 54.9
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 1.6e-147 527.3 632 63.4
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 3.5e-147 526.2 634 60.1
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 1.0e-146 524.6 527 66.4
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 1.0e-146 524.6 635 61.1
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 3.8e-146 522.7 441 67.3
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 1.9e-145 520.4 418 72.0
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 1.6e-144 517.3 529 65.0
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 1.6e-144 517.3 637 62.2
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 3.6e-144 516.2 532 63.3
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 1.0e-143 514.6 646 58.0
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 2.6e-142 510.0 516 65.9
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 4.4e-142 509.2 631 52.9
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 5.7e-142 508.8 626 61.8
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 7.5e-142 508.4 530 65.8
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 2.8e-141 506.5 561 60.1
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 4.1e-140 502.7 638 59.4
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 2.7e-139 500.0 539 64.2
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 3.5e-139 499.6 646 55.1
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 5.0e-138 495.7 675 52.6
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 1.1e-137 494.6 511 65.9
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 2.5e-137 493.4 481 68.8
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 3.6e-136 489.6 428 68.2
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 8.9e-135 485.0 636 58.8
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 7.5e-134 481.9 560 55.9
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 9.8e-134 481.5 559 57.1
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 4.9e-133 479.2 626 57.5
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 3.9e-130 469.5 359 71.9
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 6.6e-130 468.8 507 63.7
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 3.3e-129 466.5 367 69.8
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 3.3e-129 466.5 367 69.8
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 7.3e-129 465.3 464 59.5
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 1.6e-128 464.2 695 50.9
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 7.0e-124 448.7 662 57.6
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 7.0e-124 448.7 572 53.5
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 7.8e-123 445.3 640 58.0
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 1.7e-122 444.1 536 59.1
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 1.7e-122 444.1 536 59.1
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 1.7e-122 444.1 652 58.1
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 2.3e-122 443.7 536 58.2
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.1e-121 441.4 369 71.8
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 4.3e-121 439.5 536 58.8
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 8.1e-120 435.3 528 57.2
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 1.1e-119 434.9 500 55.2
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 5.8e-118 429.1 643 56.6
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 8.3e-117 425.2 636 57.9
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 1.1e-113 414.8 651 56.1
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 3.3e-113 413.3 634 56.2
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 1.2e-112 411.4 626 47.1
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 3.6e-112 409.8 538 55.2
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 9.2e-108 395.2 526 55.5
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.6e-107 392.9 372 69.4
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.6e-107 392.9 372 69.4
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.3e-106 391.3 372 69.4
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.3e-106 390.6 372 69.1
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 3.0e-106 390.2 538 53.2
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 8.7e-106 388.7 471 56.3
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 3.5e-99 366.7 310 73.9
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.1e-96 357.5 335 58.5
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 3.2e-92 343.6 343 56.3
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 1.4e-87 328.2 314 58.3
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.2e-85 320.9 472 50.8
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 1.6e-83 314.7 536 46.6
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 2.8e-72 277.3 384 47.1
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 5.9e-70 269.6 476 41.4
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 1.9e-68 264.6 273 53.8
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.2e-64 251.1 551 42.1
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 1.1e-60 238.8 269 51.7
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 5.5e-60 236.5 509 38.3
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 2.6e-57 227.6 246 50.4
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 2.0e-46 191.4 267 56.6
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 1.9e-44 184.9 167 64.7
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 1.8e-42 178.3 136 72.8
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 9.7e-41 172.6 103 81.6
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.4e-39 168.7 262 57.6
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 2.3e-34 151.4 189 55.0
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 1.1e-28 132.5 281 36.3
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 4.2e-28 130.6 322 32.6
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 1.6e-22 112.1 232 31.9
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 1.5e-20 105.5 420 32.4
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 5.2e-18 97.1 61 78.7
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 2.0e-17 95.1 135 53.3
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 1.7e-16 92.0 89 58.4
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 1.1e-15 89.4 53 77.4
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 1.9e-12 78.6 41 90.2
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 1.3e-08 65.9 151 57.0
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 1.7e-08 65.5 222 45.9


User provided reference genes

Program Settings