Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1994.2 1016 100.0
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1813.9 1022 90.9
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1597.8 1018 79.7
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1561.6 1017 77.7
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1561.6 1025 76.6
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1558.5 1020 77.3
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1545.8 1020 77.1
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1545.8 1021 76.7
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1536.5 1018 76.7
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1528.5 1022 76.5
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1522.7 1021 75.2
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1522.7 1015 75.6
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1521.9 1031 75.3
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1521.9 1018 75.7
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1521.1 1020 75.5
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1518.1 1017 76.1
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1516.5 1009 75.7
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1511.1 1018 75.0
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1510.7 1018 75.0
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1502.6 1069 72.2
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1501.9 1021 75.1
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1500.0 1010 74.7
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1500.0 1023 74.0
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1498.0 1024 74.6
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1497.3 1052 73.0
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1495.7 1020 75.2
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1495.7 1017 74.1
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1494.9 1025 74.6
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1494.6 1016 74.4
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1493.8 1029 73.8
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1493.4 1021 75.0
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1493.0 1025 74.7
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1491.5 1023 73.4
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1491.1 1021 73.8
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1490.7 1020 74.8
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1490.7 1039 73.6
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1490.3 1026 73.2
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1490.3 1014 75.2
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1488.4 1014 75.1
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1488.0 1019 73.5
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1487.6 1039 73.5
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1483.8 1034 73.6
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1483.4 1015 73.5
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1483.4 1030 74.2
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1481.5 1020 73.7
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1480.3 1025 73.5
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1479.5 1019 73.1
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1476.5 1008 74.0
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1475.3 1015 74.1
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1471.8 1029 73.3
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1464.9 1018 73.5
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1461.8 1031 72.7
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1461.0 1059 71.1
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1458.7 1018 73.2
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1458.4 1026 72.0
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1454.1 1036 72.2
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1450.3 1011 72.9
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1448.7 1020 72.5
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1448.0 1016 72.3
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1446.8 1026 71.9
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1441.0 1024 71.3
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1441.0 1024 71.3
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1439.1 1024 71.1
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1437.2 1021 71.6
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1436.8 1023 71.4
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1436.0 1024 72.1
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1435.2 1031 72.0
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1435.2 1022 71.3
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1434.9 1020 72.2
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1433.7 1022 71.4
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1432.5 1025 71.3
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1431.8 1027 71.3
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1427.5 1014 72.4
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1427.2 1028 71.3
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1427.2 1030 71.3
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1424.1 1014 71.3
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1422.9 1014 71.4
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1419.4 1025 70.7
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1419.4 1032 71.0
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1418.7 1022 71.3
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1417.9 1028 70.2
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1417.9 1028 70.2
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1417.5 1023 72.3
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1417.5 1021 71.5
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1416.7 1025 70.5
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1416.4 1029 70.4
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1416.4 1029 70.4
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1411.4 1031 70.7
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1411.0 1129 66.1
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1410.6 1021 70.4
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1407.1 1036 69.9
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1404.4 1021 71.8
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1403.7 1021 71.8
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1403.7 1034 70.8
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1401.3 1025 70.0
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1399.8 1010 70.5
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1397.9 1063 69.4
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1395.9 1032 69.6
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1392.1 1065 69.0
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1391.7 1034 69.6
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1387.5 1025 70.1
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1311.6 958 69.0
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1287.7 1030 66.1
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1278.5 1014 65.0
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1275.8 951 68.6
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1274.6 911 70.9
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1269.2 1021 66.4
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1261.5 1014 65.4
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1238.0 1003 64.6
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1233.8 1005 64.8
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1232.6 1030 64.5
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1207.6 821 73.4
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1084.3 1024 56.1
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 1.8e-310 1069.3 1019 56.4
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 3.8e-308 1061.6 1014 55.5
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 5.3e-302 1041.2 738 73.0
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 4.5e-293 1011.5 1032 53.7
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 2.0e-285 986.1 706 70.0
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 2.6e-285 985.7 709 69.3
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 3.3e-280 968.8 563 88.5
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 7.4e-280 967.6 597 82.2
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 4.6e-274 948.3 1037 51.8
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.6e-269 932.6 1004 52.5
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 7.9e-266 921.0 1029 51.2
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 1.0e-265 920.6 1021 52.1
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 3.0e-265 919.1 612 74.5
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.2e-249 865.1 957 52.1
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 1.0e-225 787.7 453 86.1
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 3.5e-213 746.1 411 91.0
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 2.3e-209 733.4 420 87.1
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 4.9e-199 699.1 1017 44.1
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 1.8e-185 654.1 436 75.0
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 1.2e-184 651.4 1011 42.3
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.1e-177 628.2 399 77.2
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 5.1e-172 609.4 359 85.0
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 2.2e-167 594.0 507 59.6
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.5e-166 589.3 480 64.6
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 3.6e-165 586.6 1034 36.9
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 3.1e-137 493.8 456 57.0
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 1.7e-135 488.0 322 74.2
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.5e-135 486.1 373 66.8
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.5e-134 484.2 371 69.0
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.6e-133 481.5 367 66.8
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.6e-133 481.5 367 66.8
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 9.8e-123 445.7 586 44.9
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 8.3e-122 442.6 544 49.4
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 5.6e-118 429.9 1049 32.9
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 1.0e-116 425.6 559 45.6
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 1.0e-116 425.6 646 41.5
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 3.2e-89 334.3 278 61.2
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 1.7e-87 328.6 195 84.1
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.6e-85 322.0 290 57.2
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.3e-82 312.4 509 41.1
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 2.1e-77 295.0 282 56.0
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 2.1e-77 295.0 511 36.0
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.5e-67 262.3 408 42.9
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 3.0e-63 248.1 398 40.2
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 5.1e-63 247.3 181 69.6
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 4.0e-60 237.7 132 87.1
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.8e-55 222.2 229 52.8
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.9e-51 207.2 297 43.1
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.7e-50 205.7 220 51.8
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 1.4e-49 202.6 162 68.5
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 2.7e-48 198.4 123 79.7
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 5.3e-44 184.1 187 49.2
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 6.9e-44 183.7 140 65.7
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 1.5e-38 166.0 144 61.8
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 9.1e-36 156.8 176 52.8
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.9e-33 149.1 253 39.9
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.3e-31 142.1 119 63.0
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.2e-26 125.6 91 69.2
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.5e-25 122.9 203 38.9
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 3.0e-23 115.2 79 69.6
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 4.5e-19 101.3 260 31.9
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 3.7e-13 81.6 55 72.7
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 8.3e-13 80.5 73 47.9
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 5.0e-10 71.2 49 67.3
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.1e-09 70.1 115 33.9
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 4.7e-08 64.7 70 47.1
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 4.4e-06 58.2 68 50.0
TAR365G1210 Trochodendron aralioides HOM05D000215 ORTHO05D002282 4.4e-06 58.2 79 43.0


User provided reference genes

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