Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.6e-34 147.1 79 100.0
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 2.6e-23 111.7 78 76.9
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 2.6e-23 111.7 78 76.9
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 2.2e-22 108.6 78 71.8
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.8e-22 107.8 78 71.8
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 4.9e-22 107.5 78 74.4
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.9e-22 107.5 78 71.8
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 6.4e-22 107.1 78 75.6
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 6.4e-22 107.1 78 75.6
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 1.1e-21 106.3 78 70.5
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.4e-21 105.9 78 71.8
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.9e-21 105.5 78 73.1
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.9e-21 105.5 78 69.2
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 5.4e-21 104.0 78 71.8
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 5.4e-21 104.0 78 71.8
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.4e-21 104.0 78 71.8
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.4e-21 104.0 78 71.8
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 5.4e-21 104.0 78 73.1
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 7.1e-21 103.6 78 71.8
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 7.1e-21 103.6 78 73.1
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 7.1e-21 103.6 78 70.5
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 9.3e-21 103.2 78 71.8
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 9.3e-21 103.2 78 71.8
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 9.3e-21 103.2 78 71.8
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 1.2e-20 102.8 78 71.8
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 1.2e-20 102.8 78 73.1
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.2e-20 102.8 78 67.9
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 1.6e-20 102.4 78 73.1
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 1.6e-20 102.4 78 74.4
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 1.6e-20 102.4 78 71.8
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.7e-20 101.7 78 71.8
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 2.7e-20 101.7 78 70.5
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 2.7e-20 101.7 78 71.8
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.7e-20 101.7 78 69.2
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.7e-20 101.7 78 69.2
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 2.7e-20 101.7 78 69.2
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 2.7e-20 101.7 78 70.5
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 2.7e-20 101.7 78 70.5
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 3.5e-20 101.3 78 66.7
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 3.5e-20 101.3 78 71.8
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 3.5e-20 101.3 78 71.8
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 3.5e-20 101.3 78 71.8
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 3.5e-20 101.3 78 70.5
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.6e-20 100.9 78 70.5
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.6e-20 100.9 78 70.5
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.6e-20 100.9 67 77.6
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 4.6e-20 100.9 78 70.5
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 4.6e-20 100.9 78 67.9
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 4.6e-20 100.9 78 67.9
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 6.0e-20 100.5 78 69.2
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 6.0e-20 100.5 78 69.2
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 6.0e-20 100.5 78 69.2
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 7.8e-20 100.1 78 69.2
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 7.8e-20 100.1 78 70.5
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 1.0e-19 99.8 78 67.9
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 1.0e-19 99.8 78 69.2
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 1.3e-19 99.4 78 70.5
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 1.3e-19 99.4 78 67.9
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 1.3e-19 99.4 78 69.2
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 1.7e-19 99.0 78 66.7
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 2.3e-19 98.6 78 65.4
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 2.3e-19 98.6 78 67.9
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 2.3e-19 98.6 78 70.5
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 3.0e-19 98.2 78 66.7
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 3.9e-19 97.8 78 66.7
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 5.1e-19 97.4 70 74.3
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 5.1e-19 97.4 78 67.9
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 5.1e-19 97.4 78 64.1
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 8.7e-19 96.7 78 66.7
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 8.7e-19 96.7 75 65.3
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 1.1e-18 96.3 75 68.0
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.1e-18 96.3 78 66.7
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 1.1e-18 96.3 78 65.4
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 1.1e-18 96.3 78 67.9
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 1.9e-18 95.5 78 66.7
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.9e-18 95.5 78 66.7
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 1.9e-18 95.5 78 66.7
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 2.5e-18 95.1 78 65.4
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 2.5e-18 95.1 78 65.4
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 3.3e-18 94.7 78 62.8
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 5.6e-18 94.0 78 66.7
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.6e-18 94.0 78 66.7
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 7.3e-18 93.6 78 64.1
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 7.3e-18 93.6 78 66.7
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 7.3e-18 93.6 78 66.7
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 9.6e-18 93.2 77 66.2
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 9.6e-18 93.2 78 65.4
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.3e-17 92.8 75 64.0
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.6e-17 92.4 78 65.4
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 1.6e-17 92.4 78 65.4
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.1e-17 92.0 78 65.4
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.1e-17 92.0 78 65.4
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.1e-17 92.0 78 65.4
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 2.8e-17 91.7 78 64.1
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 3.6e-17 91.3 78 66.7
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 3.6e-17 91.3 76 61.8
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 4.8e-17 90.9 78 66.7
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 6.2e-17 90.5 78 66.7
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 6.2e-17 90.5 78 61.5
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 6.2e-17 90.5 78 66.7
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 6.2e-17 90.5 75 69.3
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 6.2e-17 90.5 75 68.0
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 6.2e-17 90.5 78 64.1
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 8.1e-17 90.1 78 60.3
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 8.1e-17 90.1 78 60.3
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.1e-16 89.7 78 65.4
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 2.4e-16 88.6 78 60.3
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 2.4e-16 88.6 78 60.3
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 3.1e-16 88.2 74 63.5
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 4.0e-16 87.8 78 65.4
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 4.0e-16 87.8 78 64.1
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 5.3e-16 87.4 78 60.3
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 5.3e-16 87.4 78 60.3
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 5.3e-16 87.4 78 60.3
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 5.3e-16 87.4 78 60.3
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 5.3e-16 87.4 78 60.3
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 5.3e-16 87.4 78 62.8
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 9.0e-16 86.7 78 59.0
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 9.0e-16 86.7 78 59.0
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 9.0e-16 86.7 78 59.0
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 1.2e-15 86.3 78 59.0
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 1.2e-15 86.3 78 59.0
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 1.5e-15 85.9 78 65.4
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 1.5e-15 85.9 78 57.7
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 2.0e-15 85.5 78 62.8
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.0e-15 85.5 78 57.7
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 3.4e-15 84.7 78 59.0
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 3.4e-15 84.7 78 59.0
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 7.6e-15 83.6 78 64.1
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 9.9e-15 83.2 78 59.0
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 9.9e-15 83.2 78 56.4
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.7e-14 82.4 78 55.1
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 2.2e-14 82.0 78 59.0
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 2.2e-14 82.0 67 67.2
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 4.9e-14 80.9 78 60.3
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 6.4e-14 80.5 78 53.8
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 6.4e-14 80.5 78 55.1
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 8.4e-14 80.1 78 57.7
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 8.4e-14 80.1 77 57.1
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 1.9e-13 79.0 78 53.8
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 1.9e-13 79.0 78 55.1
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 2.4e-13 78.6 67 67.2
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 5.4e-13 77.4 78 56.4
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 1.6e-12 75.9 78 56.4
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.6e-12 75.9 76 56.6
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.1e-12 75.5 78 53.8
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 2.7e-12 75.1 78 52.6
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 7.9e-12 73.6 75 58.7
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.0e-11 73.2 77 54.5
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 8.7e-11 70.1 75 50.7
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 1.1e-10 69.7 78 53.8
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 1.9e-10 68.9 71 53.5
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 3.1e-08 61.6 45 68.9
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 9.9e-07 56.6 78 43.6
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 3.8e-06 54.7 78 47.4


User provided reference genes

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