Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.6e-56 220.7 111 100.0
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.6e-26 121.3 78 78.2
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 1.7e-20 102.8 74 71.6
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 1.7e-20 102.8 74 71.6
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 3.8e-20 101.7 74 68.9
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 1.4e-19 99.8 74 68.9
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 1.4e-19 99.8 74 66.2
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.9e-19 99.4 74 70.3
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 3.2e-19 98.6 74 66.2
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 3.2e-19 98.6 74 68.9
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 4.2e-19 98.2 74 67.6
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 7.1e-19 97.4 74 66.2
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 7.1e-19 97.4 74 67.6
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 9.3e-19 97.1 74 63.5
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 9.3e-19 97.1 74 64.9
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 1.2e-18 96.7 74 66.2
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.2e-18 96.7 74 64.9
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 1.2e-18 96.7 74 66.2
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 1.2e-18 96.7 74 64.9
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 1.6e-18 96.3 74 67.6
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 2.1e-18 95.9 74 66.2
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 2.1e-18 95.9 74 63.5
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 2.1e-18 95.9 74 66.2
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 2.7e-18 95.5 74 64.9
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 2.7e-18 95.5 74 64.9
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.7e-18 95.5 74 66.2
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 3.5e-18 95.1 74 67.6
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.6e-18 94.7 74 64.9
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.6e-18 94.7 74 64.9
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 6.0e-18 94.4 74 66.2
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 6.0e-18 94.4 74 66.2
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 7.9e-18 94.0 74 64.9
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 7.9e-18 94.0 74 63.5
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 1.0e-17 93.6 74 63.5
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.0e-17 93.6 74 67.6
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.3e-17 93.2 73 65.8
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 1.8e-17 92.8 74 64.9
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 1.8e-17 92.8 74 63.5
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 2.3e-17 92.4 74 64.9
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 2.3e-17 92.4 74 62.2
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.3e-17 92.4 74 62.2
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.3e-17 92.4 74 62.2
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 3.0e-17 92.0 74 63.5
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 3.0e-17 92.0 74 62.2
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 3.0e-17 92.0 74 66.2
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 3.0e-17 92.0 74 62.2
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 3.0e-17 92.0 74 62.2
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 3.0e-17 92.0 74 62.2
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 3.9e-17 91.7 74 63.5
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 5.1e-17 91.3 74 64.9
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 5.1e-17 91.3 74 60.8
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 6.7e-17 90.9 74 63.5
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 6.7e-17 90.9 74 62.2
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 6.7e-17 90.9 74 63.5
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 6.7e-17 90.9 74 63.5
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 8.7e-17 90.5 74 63.5
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 8.7e-17 90.5 70 65.7
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 1.1e-16 90.1 74 58.1
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 1.1e-16 90.1 74 64.9
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 1.1e-16 90.1 74 64.9
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 1.1e-16 90.1 74 62.2
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-16 90.1 74 62.2
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-16 90.1 74 62.2
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.1e-16 90.1 74 62.2
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.1e-16 90.1 74 62.2
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 1.1e-16 90.1 74 62.2
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 1.1e-16 90.1 74 60.8
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 1.5e-16 89.7 74 62.2
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 1.5e-16 89.7 74 62.2
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.9e-16 89.4 74 62.2
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 1.9e-16 89.4 74 60.8
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.9e-16 89.4 74 59.5
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.5e-16 89.0 74 60.8
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.5e-16 89.0 74 60.8
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.5e-16 89.0 74 60.8
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 3.3e-16 88.6 74 60.8
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 4.3e-16 88.2 74 60.8
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 5.7e-16 87.8 74 58.1
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 5.7e-16 87.8 74 60.8
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 7.4e-16 87.4 74 60.8
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 7.4e-16 87.4 74 63.5
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 7.4e-16 87.4 74 59.5
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 1.3e-15 86.7 74 59.5
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.6e-15 86.3 74 60.8
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.6e-15 86.3 74 58.1
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.6e-15 86.3 74 58.1
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.6e-15 86.3 89 51.7
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.6e-15 86.3 74 60.8
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 2.2e-15 85.9 74 58.1
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 2.2e-15 85.9 74 59.5
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 2.2e-15 85.9 74 60.8
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 2.2e-15 85.9 74 60.8
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.8e-15 85.5 74 56.8
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 2.8e-15 85.5 70 62.9
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 3.7e-15 85.1 74 63.5
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 3.7e-15 85.1 74 58.1
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 4.8e-15 84.7 74 56.8
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 6.3e-15 84.3 74 62.2
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 8.2e-15 84.0 79 54.4
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 8.2e-15 84.0 74 59.5
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 1.1e-14 83.6 79 54.4
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.1e-14 83.6 74 60.8
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 1.1e-14 83.6 74 56.8
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 1.1e-14 83.6 74 59.5
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 1.4e-14 83.2 79 53.2
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 1.8e-14 82.8 79 53.2
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 1.8e-14 82.8 79 53.2
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 1.8e-14 82.8 74 55.4
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.8e-14 82.8 74 56.8
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.8e-14 82.8 74 56.8
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.8e-14 82.8 74 62.2
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.4e-14 82.4 74 56.8
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.4e-14 82.4 79 53.2
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 3.1e-14 82.0 74 56.8
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 4.1e-14 81.6 74 58.1
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 4.1e-14 81.6 79 53.2
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 4.1e-14 81.6 74 54.1
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 4.1e-14 81.6 74 54.1
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 4.1e-14 81.6 74 58.1
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 5.3e-14 81.3 74 56.8
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 6.9e-14 80.9 79 51.9
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 6.9e-14 80.9 74 55.4
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 9.0e-14 80.5 79 51.9
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 9.0e-14 80.5 74 56.8
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.2e-13 80.1 74 55.4
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 1.5e-13 79.7 79 51.9
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 1.5e-13 79.7 79 51.9
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 1.5e-13 79.7 79 51.9
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.5e-13 79.7 74 55.4
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 2.0e-13 79.3 79 51.9
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 2.0e-13 79.3 79 51.9
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 3.4e-13 78.6 73 56.2
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 1.0e-12 77.0 74 55.4
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.7e-12 76.3 74 54.1
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 5.0e-12 74.7 74 52.7
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 5.0e-12 74.7 75 56.0
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 8.5e-12 73.9 73 52.1
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.1e-11 73.6 74 52.7
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 3.2e-11 72.0 74 48.6
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 4.2e-11 71.6 74 52.7
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 5.5e-11 71.2 56 62.5
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 7.2e-11 70.9 70 51.4
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.2e-10 70.1 69 53.6
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 3.6e-10 68.6 71 53.5
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.6e-10 68.6 79 45.6
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 4.6e-10 68.2 74 47.3
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 1.0e-09 67.0 75 53.3
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 1.4e-09 66.6 73 53.4
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 1.8e-09 66.2 74 54.1
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 5.1e-09 64.7 75 50.7
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 4.3e-08 61.6 62 51.6
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 4.3e-08 61.6 53 50.9
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 1.4e-06 56.6 60 50.0
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.1e-06 55.5 49 57.1
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 4.1e-06 55.1 60 48.3


User provided reference genes

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