Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 4.8e-110 401.4 228 100.0
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 5.5e-90 334.7 228 84.2
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 8.7e-88 327.4 233 82.4
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 1.1e-87 327.0 228 83.3
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.5e-87 326.6 235 81.3
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.5e-87 326.6 235 81.3
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 5.7e-87 324.7 234 82.9
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 1.3e-86 323.6 233 81.1
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 1.6e-86 323.2 232 81.0
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 2.1e-86 322.8 234 82.1
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 6.2e-86 321.2 233 81.1
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 8.2e-86 320.9 234 82.1
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 1.4e-85 320.1 233 80.7
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 4.0e-85 318.5 233 80.3
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 4.0e-85 318.5 234 81.2
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 9.0e-85 317.4 234 80.3
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 1.5e-84 316.6 228 75.9
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 2.0e-84 316.2 238 78.6
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 2.0e-84 316.2 232 79.7
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 2.0e-84 316.2 232 78.9
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 2.6e-84 315.8 234 80.3
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 3.4e-84 315.5 236 78.8
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 3.4e-84 315.5 233 78.1
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 4.5e-84 315.1 229 80.3
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 5.8e-84 314.7 234 79.1
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 5.8e-84 314.7 232 80.2
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 1.3e-83 313.5 250 74.8
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 2.2e-83 312.8 234 79.1
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 2.2e-83 312.8 234 76.1
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 2.9e-83 312.4 234 77.4
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 2.9e-83 312.4 234 77.4
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 3.8e-83 312.0 234 77.8
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 6.5e-83 311.2 233 77.7
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 6.5e-83 311.2 235 78.7
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 6.5e-83 311.2 235 78.7
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 8.4e-83 310.8 236 79.2
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.1e-82 310.5 235 79.6
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 1.9e-82 309.7 234 79.1
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.9e-82 309.7 235 79.1
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.5e-82 309.3 234 78.2
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.5e-82 309.3 233 77.3
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 7.1e-82 307.8 228 80.7
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 2.1e-81 306.2 235 79.6
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 6.1e-81 304.7 228 81.1
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 6.1e-81 304.7 233 76.8
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 7.9e-81 304.3 232 76.3
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 1.8e-80 303.1 235 74.9
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 1.8e-80 303.1 235 74.9
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 1.8e-80 303.1 236 78.4
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 5.1e-80 301.6 235 74.5
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 5.1e-80 301.6 236 74.6
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 5.1e-80 301.6 236 74.6
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 6.7e-80 301.2 235 74.5
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 8.7e-80 300.8 234 77.8
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 8.7e-80 300.8 234 78.2
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 8.7e-80 300.8 234 77.4
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 1.1e-79 300.4 234 76.9
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 1.1e-79 300.4 234 79.1
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 1.1e-79 300.4 235 74.5
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.5e-79 300.1 232 77.2
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.9e-79 299.7 235 77.0
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 2.5e-79 299.3 246 74.0
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.5e-79 299.3 234 76.9
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 2.5e-79 299.3 233 76.0
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 2.5e-79 299.3 232 75.4
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.5e-79 299.3 235 76.6
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 3.3e-79 298.9 234 76.5
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 4.3e-79 298.5 235 74.9
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 4.3e-79 298.5 233 76.4
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 4.3e-79 298.5 235 73.6
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 4.3e-79 298.5 233 75.5
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.4e-79 297.7 235 76.2
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 1.3e-78 297.0 235 74.5
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 1.3e-78 297.0 235 73.6
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 1.6e-78 296.6 235 74.0
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 2.2e-78 296.2 235 73.6
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 2.2e-78 296.2 235 73.6
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 2.8e-78 295.8 233 73.4
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 2.8e-78 295.8 235 73.2
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 2.8e-78 295.8 235 73.2
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 2.8e-78 295.8 235 73.2
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 3.7e-78 295.4 235 75.7
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 4.8e-78 295.0 235 74.9
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 1.4e-77 293.5 233 75.1
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 1.8e-77 293.1 224 77.2
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 2.4e-77 292.7 235 73.6
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 3.1e-77 292.4 235 75.3
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 6.9e-77 291.2 233 77.7
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 9.0e-77 290.8 235 73.2
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 9.0e-77 290.8 235 76.2
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.2e-76 290.4 239 74.1
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 2.0e-76 289.7 232 74.6
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 3.4e-76 288.9 233 77.3
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 7.7e-76 287.7 233 75.5
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 1.0e-75 287.3 236 72.9
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 1.3e-75 287.0 229 74.7
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.2e-75 286.2 234 73.5
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 2.2e-75 286.2 233 69.1
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 3.8e-75 285.4 241 68.5
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.9e-74 283.1 234 70.1
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 4.2e-74 282.0 233 69.5
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 1.2e-73 280.4 230 72.6
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 2.7e-73 279.3 235 74.5
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 4.6e-73 278.5 235 72.8
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.0e-72 277.3 288 59.7
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 1.0e-72 277.3 233 73.4
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.4e-72 276.9 233 71.2
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.8e-72 276.6 235 66.4
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 1.8e-72 276.6 235 69.8
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 2.3e-72 276.2 235 73.2
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 3.0e-72 275.8 230 72.2
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 5.1e-72 275.0 232 68.5
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 6.7e-72 274.6 230 71.3
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.5e-71 273.5 228 68.4
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 3.3e-71 272.3 240 72.5
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 7.4e-71 271.2 236 72.0
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 7.4e-71 271.2 235 71.9
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-70 270.4 228 67.1
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.1e-69 267.3 236 71.2
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 1.1e-69 267.3 236 71.2
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 4.1e-69 265.4 255 61.6
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 6.9e-69 264.6 233 69.1
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 6.9e-69 264.6 234 69.2
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.7e-68 261.2 218 74.8
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-67 260.4 228 71.1
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 2.2e-67 259.6 228 69.7
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 8.5e-67 257.7 233 67.8
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 8.5e-67 257.7 228 70.6
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.1e-66 257.3 231 71.9
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 1.9e-66 256.5 230 68.3
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 4.2e-66 255.4 229 69.0
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.2e-66 255.4 228 70.2
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 7.2e-66 254.6 228 69.7
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 6.7e-64 248.1 228 67.5
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 4.4e-63 245.4 274 59.9
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 5.3e-61 238.4 233 66.5
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 2.0e-60 236.5 233 66.1
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 8.0e-57 224.6 189 75.7
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 1.8e-53 213.4 152 82.2
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 9.1e-53 211.1 236 61.0
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 3.5e-52 209.1 192 71.9
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.7e-51 206.8 158 79.1
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.0e-48 197.6 251 56.2
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 1.3e-46 190.7 233 55.8
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 3.7e-46 189.1 124 80.6
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.8e-46 188.7 230 58.3
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.1e-45 186.0 111 86.5
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.1e-45 185.7 111 85.6
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.5e-44 182.2 111 84.7
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.7e-43 180.3 191 66.0
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 1.7e-43 180.3 124 77.4
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 1.5e-42 177.2 243 53.1
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.9e-42 176.8 124 75.0
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 9.1e-37 157.9 124 71.8
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 8.6e-35 151.4 137 68.6
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 7.2e-34 148.3 154 66.2
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 3.6e-33 146.0 94 83.0
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 4.7e-33 145.6 97 81.4
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 1.5e-31 140.6 97 74.2
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 5.6e-26 122.1 178 52.2
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 1.2e-25 120.9 228 41.7
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.6e-25 120.6 82 78.0
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 3.1e-24 116.3 89 67.4
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 5.2e-24 115.5 77 76.6
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.3e-22 110.9 146 50.0
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 3.7e-22 109.4 97 64.9
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 8.3e-22 108.2 78 70.5
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 3.0e-19 99.8 74 74.3
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 3.9e-19 99.4 225 37.3
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.6e-18 95.5 202 39.6
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 6.8e-16 88.6 44 95.5
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 4.1e-13 79.3 53 73.6
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 5.4e-13 79.0 70 67.1
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.0e-07 60.5 91 42.9
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 2.6e-07 60.1 110 36.4
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.8e-07 58.9 94 44.7


User provided reference genes

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