Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02864 Aquilegia oxysepala HOM05D005549 ORTHO05D006771 7.5e-200 700.3 347 100.0
Dinv38568 Davidia involucrata HOM05D005549 ORTHO05D006771 2.8e-146 522.3 344 70.3
TAR622G1114 Trochodendron aralioides HOM05D005549 ORTHO05D006771 4.8e-146 521.5 345 70.7
Haze_07531 Corylus avellana HOM05D005549 ORTHO05D006771 1.7e-143 513.1 345 69.9
Actinidia19108 Actinidia chinensis HOM05D005549 ORTHO05D006771 5.0e-143 511.5 353 67.7
QL10p009538 Quercus lobata HOM05D005549 ORTHO05D006771 4.2e-142 508.4 345 69.9
Manes.06G106600 Manihot esculenta HOM05D005549 ORTHO05D006771 1.8e-140 503.1 354 67.5
Prupe.5G171000 Prunus persica HOM05D005549 ORTHO05D006771 2.3e-140 502.7 344 66.9
Nn4g25809 Nelumbo nucifera HOM05D005549 ORTHO05D006771 3.9e-140 501.9 343 67.6
Cc04_g12210 Coffea canephora HOM05D005549 ORTHO05D006771 5.7e-139 498.0 343 68.2
Thecc.03G015300 Theobroma cacao HOM05D005549 ORTHO05D006771 8.2e-138 494.2 345 66.1
Sabra14G0003300 Salix brachista HOM05D005549 ORTHO05D006771 1.4e-137 493.4 345 64.9
Rhsim12G0166100 Rhododendron simsii HOM05D005549 ORTHO05D006771 2.4e-137 492.7 350 66.0
Atru.chr9.2502 Acer truncatum HOM05D005549 ORTHO05D006771 9.1e-137 490.7 344 64.5
FAN08G3612 Fragaria x ananassa HOM05D005549 ORTHO05D006771 3.4e-136 488.8 345 67.0
Gorai.006G188700 Gossypium raimondii HOM05D005549 ORTHO05D006771 1.3e-135 486.9 341 65.7
vmacro16625 Vaccinium macrocarpon HOM05D005549 ORTHO05D006771 1.7e-135 486.5 353 65.7
MBI16_g05472_MAGBIO Magnolia biondii HOM05D005549 ORTHO05D006771 3.8e-135 485.3 345 66.7
Duzib205G0052 Durio zibethinus HOM05D005549 ORTHO05D006771 5.0e-135 485.0 344 64.8
PGSC0003DMG400028373 Solanum tuberosum HOM05D005549 ORTHO05D006771 6.5e-135 484.6 343 63.6
TWI14G0382 Tripterygium wilfordii HOM05D005549 ORTHO05D006771 1.1e-134 483.8 346 65.9
Hma1.2p1_0046F.1_g026660 Hydrangea macrophylla HOM05D005549 ORTHO05D006771 1.9e-134 483.0 393 58.3
COL.COLO4_30080 Corchorus olitorius HOM05D005549 ORTHO05D006771 2.5e-134 482.6 345 67.2
Potri.014G000900 Populus trichocarpa HOM05D005549 ORTHO05D006771 3.2e-134 482.3 345 64.3
RcHm_v2.0_Chr7g0193241 Rosa chinensis HOM05D005549 ORTHO05D006771 3.2e-134 482.3 344 66.6
FvH4_5g05540 Fragaria vesca HOM05D005549 ORTHO05D006771 4.2e-134 481.9 345 65.5
FAN18G0652 Fragaria x ananassa HOM05D005549 ORTHO05D006771 4.2e-134 481.9 345 65.5
CiPaw.11G024000 Carya illinoinensis HOM05D005549 ORTHO05D006771 5.5e-134 481.5 344 65.7
Gohir.A09G171200 Gossypium hirsutum HOM05D005549 ORTHO05D006771 5.5e-134 481.5 343 65.0
FAN18G1717 Fragaria x ananassa HOM05D005549 ORTHO05D006771 4.7e-133 478.4 345 65.2
Ciclev10020953m.g Citrus clementina HOM05D005549 ORTHO05D006771 6.1e-133 478.0 344 64.5
Peaxi162Scf00075g00159 Petunia axillaris HOM05D005549 ORTHO05D006771 7.9e-133 477.6 348 63.8
Gohir.D09G166900 Gossypium hirsutum HOM05D005549 ORTHO05D006771 1.0e-132 477.2 343 65.3
Sopen05g007130 Solanum pennellii HOM05D005549 ORTHO05D006771 1.8e-132 476.5 343 62.4
MD06G1171600 Malus domestica HOM05D005549 ORTHO05D006771 2.3e-132 476.1 345 64.3
PSO478G4565 Papaver somniferum HOM05D005549 ORTHO05D006771 3.9e-132 475.3 343 69.4
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 3.9e-132 475.3 314 73.6
Sopen05g007150 Solanum pennellii HOM05D005549 ORTHO05D006771 1.5e-131 473.4 340 62.1
Eucgr.H00383 Eucalyptus grandis HOM05D005549 ORTHO05D006771 1.7e-130 469.9 352 64.5
Sc12g0005230 Simmondsia chinensis HOM05D005549 ORTHO05D006771 2.6e-128 462.6 346 64.7
CsaV3_1G001440 Cucumis sativus L. HOM05D005549 ORTHO05D006771 3.5e-128 462.2 344 67.4
Lalb_Chr04g0247841 Lupinus albus HOM05D005549 ORTHO05D006771 3.5e-128 462.2 344 66.6
Lj3C19G0 Lonicera japonica HOM05D005549 ORTHO05D006771 4.5e-128 461.8 344 65.7
arahy.Tifrunner.gnm1.ann1.7VTX70 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.0e-127 460.7 353 65.7
Medtr5g096040 Medicago truncatula HOM05D005549 ORTHO05D006771 1.0e-127 460.7 348 65.8
arahy.Tifrunner.gnm1.ann1.386HL4 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.3e-127 460.3 353 66.0
AUR62008189 Chenopodium quinoa HOM05D005549 ORTHO05D006771 2.9e-127 459.1 345 61.7
Hund09451 Selenicereus undatus HOM05D005549 ORTHO05D006771 5.0e-127 458.4 343 61.8
PGR031G3229 Punica granatum HOM05D005549 ORTHO05D006771 1.9e-126 456.4 345 62.9
Peaxi162Scf00141g00210 Petunia axillaris HOM05D005549 ORTHO05D006771 1.6e-125 453.4 343 61.8
MSTRG.26261 Avicennia marina HOM05D005549 ORTHO05D006771 3.6e-125 452.2 347 61.4
DCAR_016476 Daucus carota HOM05D005549 ORTHO05D006771 1.0e-124 450.7 349 64.8
TPR.G8611 Trifolium pratense HOM05D005549 ORTHO05D006771 1.0e-124 450.7 342 64.9
Ca_06401_v3 Cicer arietinum L. HOM05D005549 ORTHO05D006771 1.4e-124 450.3 342 65.5
Glyma.09G077900 Glycine max HOM05D005549 ORTHO05D006771 2.3e-124 449.5 342 65.8
VMungo1127G1558 Vigna mungo HOM05D005549 ORTHO05D006771 3.9e-124 448.7 340 64.7
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 5.2e-124 448.4 342 61.4
LjContig00081g0017630 Lotus japonicus HOM05D005549 ORTHO05D006771 1.1e-123 447.2 343 65.6
Glyma.15G218700 Glycine max HOM05D005549 ORTHO05D006771 1.5e-123 446.8 342 65.8
ClCG06G017070 Citrullus lanatus HOM05D005549 ORTHO05D006771 1.7e-122 443.4 344 65.7
arahy.Tifrunner.gnm1.ann1.BH3JLW Arachis hypogaea HOM05D005549 ORTHO05D006771 2.2e-122 443.0 343 65.9
Psat2g007040 Pisum sativum HOM05D005549 ORTHO05D006771 4.8e-122 441.8 348 64.7
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 3.1e-121 439.1 338 60.9
EL10Ac5g10725 Beta vulgaris HOM05D005549 ORTHO05D006771 4.1e-121 438.7 344 59.9
CANSAT25G1426 Cannabis sativa HOM05D005549 ORTHO05D006771 7.0e-121 438.0 344 64.0
Migut.K00304 Erythranthe guttata HOM05D005549 ORTHO05D006771 1.0e-119 434.1 341 61.3
MELO3C017092.2 Cucumis melo HOM05D005549 ORTHO05D006771 1.7e-119 433.3 344 64.5
Phvul.011G182066 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 1.7e-119 433.3 335 65.4
FAN13G1520 Fragaria x ananassa HOM05D005549 ORTHO05D006771 5.0e-119 431.8 345 61.7
FAN04G2905 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.1e-118 430.6 345 61.2
Phvul.011G182000 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 1.5e-118 430.3 335 65.1
Ah.02g110600 Amaranthus hybridus HOM05D005549 ORTHO05D006771 4.2e-118 428.7 343 62.4
Sed0023293 Sechium edule HOM05D005549 ORTHO05D006771 8.0e-117 424.5 344 63.7
unitig_37.g12682 Utricularia gibba HOM05D005549 ORTHO05D006771 4.8e-114 415.2 342 58.2
ECA232G3151 Erigeron canadensis HOM05D005549 ORTHO05D006771 1.1e-113 414.1 345 61.7
CARHR276820 Cardamine hirsuta HOM05D005549 ORTHO05D006771 1.4e-113 413.7 341 56.0
Oeu024700.1 Olea europaea HOM05D005549 ORTHO05D006771 5.3e-113 411.8 346 61.3
Aa31LG11G650 Aethionema arabicum HOM05D005549 ORTHO05D006771 9.1e-113 411.0 341 56.3
Thhalv10004522m.g Eutrema salsugineum HOM05D005549 ORTHO05D006771 1.6e-112 410.2 343 56.6
Carub.0008s2372 Capsella rubella HOM05D005549 ORTHO05D006771 8.5e-111 404.4 344 55.5
Sp2g26140 Schrenkiella parvula HOM05D005549 ORTHO05D006771 2.5e-110 402.9 345 55.4
AL8G40040 Arabidopsis lyrata HOM05D005549 ORTHO05D006771 4.2e-110 402.1 343 58.9
AT5G63010 Arabidopsis thaliana HOM05D005549 ORTHO05D006771 5.5e-110 401.7 341 56.0
Lsat_1_v5_gn_4_75780 Lactuca sativa HOM05D005549 ORTHO05D006771 1.0e-108 397.5 346 60.1
Os04g0507900 Oryza sativa ssp. japonica HOM05D005549 ORTHO05D006771 8.8e-108 394.4 353 54.1
SHI17110 Sapria himalayana HOM05D005549 ORTHO05D006771 1.5e-107 393.7 340 56.5
Zm00001eb426250 Zea mays HOM05D005549 ORTHO05D006771 5.7e-107 391.7 346 55.5
Eucgr.C01244 Eucalyptus grandis HOM05D005549 ORTHO05D006771 7.5e-107 391.3 340 54.7
HPP92_021890 Vanilla planifolia HOM05D005549 ORTHO05D006771 9.8e-107 391.0 345 58.6
BraA06t25926Z Brassica rapa HOM05D005549 ORTHO05D006771 3.1e-105 386.0 344 57.3
THA.LOC104818503 Tarenaya hassleriana HOM05D005549 ORTHO05D006771 7.7e-104 381.3 322 60.6
BcaC01g02548 Brassica carinata HOM05D005549 ORTHO05D006771 3.8e-103 379.0 344 57.0
C03p63600 Brassica napus HOM05D005549 ORTHO05D006771 3.8e-103 379.0 344 57.0
BolC3t18618H Brassica oleracea HOM05D005549 ORTHO05D006771 3.8e-103 379.0 344 57.0
SGA_v2.0_scaffold293G47425 Striga asiatica HOM05D005549 ORTHO05D006771 1.5e-102 377.1 339 58.1
A06p29790 Brassica napus HOM05D005549 ORTHO05D006771 3.6e-101 372.5 344 56.4
BcaB02g09715 Brassica carinata HOM05D005549 ORTHO05D006771 1.5e-99 367.1 341 56.6
CDE02G3271 Ceratophyllum demersum HOM05D005549 ORTHO05D006771 2.4e-89 333.2 341 48.1
Cpa.g.c31519.1 Carica papaya HOM05D005549 ORTHO05D006771 4.7e-85 318.9 236 62.7
HanXRQChr09g0272091 Helianthus annuus HOM05D005549 ORTHO05D006771 1.1e-84 317.8 273 60.4
Solyc05g012320.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 1.1e-84 317.8 216 63.9
Solyc05g012300.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 1.8e-84 317.0 219 63.9
arahy.Tifrunner.gnm1.ann1.BVT45G Arachis hypogaea HOM05D005549 ORTHO05D006771 2.4e-81 306.6 220 68.6
Potri.012G087300 Populus trichocarpa HOM05D005549 ORTHO05D006771 7.8e-80 301.6 220 62.7
Glyma.08G230900 Glycine max HOM05D005549 ORTHO05D006771 3.9e-79 299.3 218 67.0
AUR62030941 Chenopodium quinoa HOM05D005549 ORTHO05D006771 2.5e-78 296.6 221 62.0
Pp3c9_15370 Physcomitrium patens HOM05D005549 ORTHO05D006771 7.3e-78 295.0 347 41.5
Atru.chr9.2510 Acer truncatum HOM05D005549 ORTHO05D006771 1.1e-76 291.2 206 62.6
arahy.Tifrunner.gnm1.ann1.8228C9 Arachis hypogaea HOM05D005549 ORTHO05D006771 4.0e-76 289.3 211 67.8
arahy.Tifrunner.gnm1.ann1.DCL1V8 Arachis hypogaea HOM05D005549 ORTHO05D006771 4.0e-76 289.3 211 67.8
Mapoly0027s0008 Marchantia polymorpha HOM05D005549 ORTHO05D006771 3.4e-75 286.2 387 40.1
CSS0043757 Camellia sinensis var. sinensis HOM05D005549 ORTHO05D006771 1.6e-72 277.3 220 59.1
ATR0807G008 Amborella trichopoda HOM05D005549 ORTHO05D006771 1.9e-70 270.4 222 53.2
ECA232G2898 Erigeron canadensis HOM05D005549 ORTHO05D006771 5.6e-70 268.9 220 61.8
SMO367G1205 Selaginella moellendorffii HOM05D005549 ORTHO05D006771 1.2e-69 267.7 338 42.0
Peaxi162Scf00141g10027 Petunia axillaris HOM05D005549 ORTHO05D006771 2.1e-69 266.9 181 64.1
AagrBONN_evm.TU.Sc2ySwM_228.3282 Anthoceros agrestis HOM05D005549 ORTHO05D006771 6.0e-64 248.8 387 36.2
HanXRQChr16g0506951 Helianthus annuus HOM05D005549 ORTHO05D006771 4.0e-60 236.1 190 57.9
Gorai.001G151900 Gossypium raimondii HOM05D005549 ORTHO05D006771 1.5e-59 234.2 188 61.7
Gohir.D07G139801 Gossypium hirsutum HOM05D005549 ORTHO05D006771 6.4e-58 228.8 188 60.6
MD14G1177100 Malus domestica HOM05D005549 ORTHO05D006771 6.0e-56 222.2 246 49.6
MD06G1171300 Malus domestica HOM05D005549 ORTHO05D006771 3.6e-53 213.0 319 37.0
Eucgr.H00387 Eucalyptus grandis HOM05D005549 ORTHO05D006771 4.8e-53 212.6 202 49.0
HanXRQChr04g0107691 Helianthus annuus HOM05D005549 ORTHO05D006771 2.4e-52 210.3 182 60.4
CBR_g24288 Chara braunii HOM05D005549 ORTHO05D006771 6.0e-48 195.7 521 29.0
Atru.chr9.2511 Acer truncatum HOM05D005549 ORTHO05D006771 2.8e-37 160.2 116 62.9
MCO16G545 Micromonas commoda HOM05D005549 ORTHO05D006771 7.6e-35 152.1 422 29.4
Cre10.g434300 Chlamydomonas reinhardtii HOM05D005549 ORTHO05D006771 3.8e-34 149.8 257 38.5
ATR0807G036 Amborella trichopoda HOM05D005549 ORTHO05D006771 1.2e-32 144.8 107 62.6
Cpa.g.c31519.2 Carica papaya HOM05D005549 ORTHO05D006771 7.4e-30 135.6 85 74.1
Sabra12G0062500 Salix brachista HOM05D005549 ORTHO05D006771 3.8e-26 123.2 162 44.4
Gohir.D12G085501 Gossypium hirsutum HOM05D005549 ORTHO05D006771 5.0e-26 122.9 140 49.3
PRCOL_00001377 Prasinoderma coloniale HOM05D005549 ORTHO05D006771 2.7e-24 117.1 343 29.2
TPR.G8752 Trifolium pratense HOM05D005549 ORTHO05D006771 4.6e-24 116.3 80 60.0
Lj5C126T17 Lonicera japonica HOM05D005549 ORTHO05D006771 1.2e-16 91.7 97 48.5
Nitab4.5_0003499g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.7e-16 90.5 99 47.5
MD14G1177000 Malus domestica HOM05D005549 ORTHO05D006771 3.0e-15 87.0 67 56.7
Thhalv10016348m.g Eutrema salsugineum HOM05D000684 ORTHO05D000688 1.1e-06 58.5 259 22.0
arahy.Tifrunner.gnm1.ann1.NA6SJF Arachis hypogaea HOM05D000684 ORTHO05D000688 2.6e-06 57.4 136 25.7
arahy.Tifrunner.gnm1.ann1.V708II Arachis hypogaea HOM05D000684 ORTHO05D000688 2.6e-06 57.4 136 25.7
Eucgr.K00737 Eucalyptus grandis HOM05D000684 ORTHO05D000688 4.4e-06 56.6 136 25.0
CARHR126890 Cardamine hirsuta HOM05D000684 ORTHO05D000688 5.7e-06 56.2 136 25.0
Ciclev10014491m.g Citrus clementina HOM05D000684 ORTHO05D000688 5.7e-06 56.2 136 25.0
Hma1.2p1_0177F.1_g078120 Hydrangea macrophylla HOM05D000684 ORTHO05D000688 5.7e-06 56.2 259 21.6
PGR142G3017 Punica granatum HOM05D000684 ORTHO05D000688 5.7e-06 56.2 137 24.8
AL4G28470 Arabidopsis lyrata HOM05D000684 ORTHO05D000688 7.5e-06 55.8 136 25.0
BcaB02g10508 Brassica carinata HOM05D000684 ORTHO05D000688 7.5e-06 55.8 136 25.0
A05p12680 Brassica napus HOM05D000684 ORTHO05D000688 7.5e-06 55.8 136 25.0
BolC4t23211H Brassica oleracea HOM05D000684 ORTHO05D000688 7.5e-06 55.8 136 25.0
BraA05t20206Z Brassica rapa HOM05D000684 ORTHO05D000688 7.5e-06 55.8 136 25.0
Ca_06056_v3 Cicer arietinum L. HOM05D000684 ORTHO05D000688 7.5e-06 55.8 136 25.0
COL.COLO4_04558 Corchorus olitorius HOM05D000684 ORTHO05D000688 7.5e-06 55.8 136 25.0
Medtr5g085250 Medicago truncatula HOM05D000684 ORTHO05D000688 7.5e-06 55.8 136 25.0
Psat2g025120 Pisum sativum HOM05D000684 ORTHO05D000688 7.5e-06 55.8 136 25.0
Sp4g15310 Schrenkiella parvula HOM05D000684 ORTHO05D000688 7.5e-06 55.8 136 25.0
Aa31LG5G4610 Aethionema arabicum HOM05D000684 ORTHO05D000688 9.7e-06 55.5 136 24.3
AT2G32950 Arabidopsis thaliana HOM05D000684 ORTHO05D000688 9.7e-06 55.5 136 24.3


User provided reference genes

Program Settings