Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.3e-113 413.3 242 100.0
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.5e-98 363.2 242 80.2
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 1.0e-94 350.5 242 86.0
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 2.1e-92 342.8 246 74.8
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 1.1e-91 340.5 242 83.1
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 1.8e-91 339.7 242 82.6
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 3.1e-91 339.0 242 83.1
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 8.9e-91 337.4 238 83.6
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.0e-90 336.3 242 81.8
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.0e-90 336.3 242 82.2
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 9.9e-90 334.0 242 81.4
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 1.7e-89 333.2 242 72.7
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 3.2e-88 328.9 242 79.3
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.2e-87 327.0 242 79.8
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.2e-87 327.0 243 71.6
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 4.6e-87 325.1 243 76.5
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 1.3e-86 323.6 242 80.6
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.7e-86 323.2 242 78.1
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 2.3e-86 322.8 242 79.3
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.3e-86 322.8 243 75.3
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 3.0e-86 322.4 242 79.3
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 5.1e-86 321.6 242 76.0
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 6.6e-86 321.2 242 77.3
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 8.7e-86 320.9 241 77.6
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 1.1e-85 320.5 242 78.5
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.9e-85 319.7 242 78.9
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 1.9e-85 319.7 240 78.8
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.5e-85 319.3 228 83.8
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.5e-85 319.3 243 74.1
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 3.3e-85 318.9 241 77.6
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 3.3e-85 318.9 243 68.7
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 3.3e-85 318.9 241 78.8
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 4.3e-85 318.5 241 78.8
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 4.3e-85 318.5 241 70.1
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 5.6e-85 318.2 242 74.0
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 5.6e-85 318.2 242 78.9
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 9.6e-85 317.4 242 76.4
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 1.3e-84 317.0 228 80.7
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.3e-84 317.0 243 76.5
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 1.3e-84 317.0 241 76.3
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 2.8e-84 315.8 241 78.0
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 3.6e-84 315.5 241 78.4
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 3.6e-84 315.5 242 70.2
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 4.8e-84 315.1 242 75.6
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 4.8e-84 315.1 242 78.9
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 4.8e-84 315.1 242 72.7
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 6.2e-84 314.7 243 77.0
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 8.1e-84 314.3 241 75.9
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 1.1e-83 313.9 242 78.9
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 1.4e-83 313.5 241 75.5
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 1.4e-83 313.5 241 75.9
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.8e-83 313.2 243 73.7
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 1.8e-83 313.2 208 76.4
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 1.8e-83 313.2 240 69.2
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 2.4e-83 312.8 237 70.0
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 3.1e-83 312.4 242 70.7
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 3.1e-83 312.4 243 77.0
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 4.0e-83 312.0 242 68.2
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 5.3e-83 311.6 242 68.2
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 5.3e-83 311.6 243 72.4
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 2.6e-82 309.3 243 71.2
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 4.4e-82 308.5 241 77.6
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 4.4e-82 308.5 242 69.0
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 9.9e-82 307.4 236 78.0
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 1.3e-81 307.0 199 79.4
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.7e-81 306.6 227 76.7
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.9e-81 305.8 243 69.5
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.9e-81 305.8 243 69.5
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 3.8e-81 305.4 206 75.7
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 4.9e-81 305.1 241 73.4
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 4.9e-81 305.1 241 73.4
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 6.4e-81 304.7 241 73.4
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 6.4e-81 304.7 243 69.1
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 6.4e-81 304.7 243 69.1
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 8.4e-81 304.3 241 66.0
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-80 303.9 242 67.8
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.4e-80 303.5 245 66.9
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 7.1e-80 301.2 243 68.7
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 7.1e-80 301.2 209 76.1
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 7.1e-80 301.2 199 76.9
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 9.3e-80 300.8 243 68.7
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 1.6e-79 300.1 229 75.5
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 2.7e-79 299.3 205 73.7
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 2.7e-79 299.3 245 73.1
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 3.5e-79 298.9 242 68.6
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 3.5e-79 298.9 208 74.0
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 6.0e-79 298.1 206 74.3
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.3e-78 297.0 208 72.6
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 1.7e-78 296.6 209 73.2
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 6.6e-78 294.7 241 71.4
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 6.6e-78 294.7 252 64.7
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 8.7e-78 294.3 205 74.6
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 1.1e-77 293.9 232 73.3
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.1e-77 293.9 243 68.7
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 2.5e-77 292.7 240 64.6
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.5e-77 292.7 208 74.0
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.3e-76 290.4 241 63.1
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 1.6e-76 290.0 208 71.2
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 4.8e-76 288.5 194 76.8
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 8.1e-76 287.7 201 74.1
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 8.1e-76 287.7 243 63.8
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 2.4e-75 286.2 241 63.5
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 5.3e-75 285.0 205 70.7
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.5e-74 283.5 209 71.3
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 2.0e-74 283.1 244 70.5
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.4e-74 282.3 209 71.3
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 5.8e-74 281.6 210 80.0
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 4.9e-73 278.5 241 71.4
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 1.4e-72 276.9 241 60.6
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.9e-72 276.6 178 78.7
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.6e-71 273.5 210 67.6
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 1.6e-71 273.5 210 68.1
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 1.6e-71 273.5 238 60.5
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 4.6e-71 271.9 194 72.7
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 4.6e-71 271.9 210 67.1
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 4.6e-71 271.9 210 66.7
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 4.6e-71 271.9 210 66.7
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 6.0e-71 271.6 227 63.9
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 7.9e-71 271.2 210 66.7
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.8e-70 270.0 210 67.1
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 2.3e-70 269.6 210 66.2
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 2.3e-70 269.6 210 66.2
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 2.3e-70 269.6 210 67.1
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 1.6e-68 263.5 183 74.3
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 6.0e-63 245.0 194 65.5
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 3.1e-59 232.6 191 68.1
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 6.7e-54 214.9 208 59.6
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 8.7e-54 214.5 244 51.6
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 1.5e-53 213.8 157 71.3
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 1.4e-46 190.7 133 72.2
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-43 181.0 136 70.6
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 1.8e-43 180.3 111 79.3
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 7.4e-37 158.3 208 48.6
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 8.2e-36 154.8 176 50.0
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 1.3e-33 147.5 105 69.5
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 2.2e-33 146.7 173 48.0
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 1.0e-25 121.3 130 52.3
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 5.0e-25 119.0 187 39.0
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 1.1e-24 117.9 86 65.1
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 5.7e-21 105.5 183 35.5
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.7e-17 94.0 91 70.3
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 3.2e-16 89.7 57 78.9
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 1.0e-14 84.7 56 75.0
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 2.6e-13 80.1 186 30.6


User provided reference genes

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