Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 4.8e-95 351.3 193 100.0
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 7.9e-74 280.8 195 77.9
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.1e-72 276.9 192 77.6
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 2.5e-72 275.8 195 78.5
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 2.2e-71 272.7 194 76.8
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 8.2e-71 270.8 194 73.7
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 1.1e-70 270.4 195 75.9
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 1.1e-70 270.4 195 76.4
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 1.1e-70 270.4 195 76.4
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 2.4e-70 269.2 195 75.9
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 3.1e-70 268.9 195 76.9
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 6.9e-70 267.7 195 76.4
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 9.1e-70 267.3 195 75.4
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 1.1e-67 260.4 194 71.1
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 1.9e-67 259.6 192 71.9
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 4.2e-67 258.5 195 73.3
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 5.1e-65 251.5 194 73.2
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 7.4e-64 247.7 195 70.3
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 9.7e-64 247.3 192 74.5
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 1.3e-63 246.9 196 75.0
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.7e-63 246.5 197 72.1
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 2.8e-63 245.7 195 71.3
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 3.7e-63 245.4 195 72.8
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 4.8e-63 245.0 192 68.8
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 1.8e-62 243.0 196 70.9
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 5.3e-62 241.5 196 70.9
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 5.3e-62 241.5 196 70.4
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 5.3e-62 241.5 194 69.1
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 5.3e-62 241.5 195 73.3
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 7.0e-62 241.1 196 69.9
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 9.1e-62 240.7 195 73.8
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 3.5e-61 238.8 202 70.3
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 3.5e-61 238.8 196 68.9
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 7.7e-61 237.7 197 70.6
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 1.0e-60 237.3 194 70.1
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 1.0e-60 237.3 194 69.6
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 1.3e-60 236.9 194 71.1
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 1.7e-60 236.5 193 67.9
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 3.8e-60 235.3 195 71.3
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 5.0e-60 235.0 195 70.8
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 1.9e-59 233.0 197 68.5
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 2.5e-59 232.6 196 67.9
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 3.2e-59 232.3 196 71.4
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 3.2e-59 232.3 195 70.3
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 7.2e-59 231.1 197 68.0
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 9.4e-59 230.7 196 69.4
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 2.1e-58 229.6 200 69.0
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 3.6e-58 228.8 200 68.5
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 6.1e-58 228.0 198 67.2
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 1.8e-57 226.5 200 66.0
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 3.0e-57 225.7 196 67.3
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 1.5e-56 223.4 198 66.7
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 1.5e-56 223.4 161 75.8
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 3.7e-55 218.8 197 68.0
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.8e-55 218.4 197 62.9
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 8.2e-55 217.6 198 62.1
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 8.2e-55 217.6 198 62.1
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 8.2e-55 217.6 201 65.7
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.1e-54 217.2 197 61.9
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 1.1e-54 217.2 193 62.2
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.4e-54 216.9 197 61.9
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.4e-54 216.9 197 61.9
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 1.8e-54 216.5 200 64.0
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 1.8e-54 216.5 201 62.7
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 3.1e-54 215.7 193 64.2
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 3.1e-54 215.7 197 64.5
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 5.3e-54 214.9 201 63.2
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 3.5e-53 212.2 202 63.9
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 7.7e-53 211.1 192 64.1
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.3e-52 210.3 197 64.0
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 1.7e-52 209.9 196 64.8
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 2.2e-52 209.5 202 63.4
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 6.5e-52 208.0 195 67.7
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 8.5e-52 207.6 197 61.9
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 1.9e-51 206.5 196 61.2
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 2.5e-51 206.1 193 63.2
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 2.5e-51 206.1 195 66.7
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 7.2e-51 204.5 199 63.3
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 2.1e-50 203.0 203 61.1
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 2.1e-50 203.0 183 66.7
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 2.7e-50 202.6 197 61.9
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 3.6e-50 202.2 200 61.5
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 1.4e-49 200.3 192 64.6
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 2.3e-49 199.5 192 62.5
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 6.8e-49 198.0 195 62.6
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 6.8e-49 198.0 199 61.8
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.2e-48 197.2 193 62.2
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 2.0e-48 196.4 199 62.8
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 3.4e-48 195.7 196 61.7
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 4.4e-48 195.3 190 64.7
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 5.7e-48 194.9 201 60.2
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 9.7e-48 194.1 194 61.3
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 3.7e-47 192.2 199 61.3
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 1.1e-46 190.7 197 57.9
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.8e-46 189.9 203 60.6
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 2.4e-46 189.5 194 57.2
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 3.1e-46 189.1 199 57.3
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 4.1e-46 188.7 208 57.7
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 2.0e-45 186.4 198 61.1
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 5.9e-45 184.9 195 57.9
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 7.7e-45 184.5 194 57.2
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 3.8e-44 182.2 207 58.9
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 3.8e-44 182.2 207 58.9
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 1.1e-43 180.6 208 58.2
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 1.1e-43 180.6 195 55.9
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 1.9e-43 179.9 204 58.8
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 2.5e-43 179.5 204 58.3
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 2.5e-43 179.5 204 58.3
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 2.5e-43 179.5 204 58.3
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 4.2e-43 178.7 197 60.9
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 4.2e-43 178.7 200 60.5
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 5.5e-43 178.3 157 66.9
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 9.4e-43 177.6 206 60.2
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.2e-42 177.2 198 59.6
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 1.2e-42 177.2 197 58.4
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 1.6e-42 176.8 209 57.4
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 1.6e-42 176.8 209 57.4
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 2.1e-42 176.4 207 57.5
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 2.7e-42 176.0 196 59.2
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 4.7e-42 175.3 206 57.3
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 1.4e-41 173.7 204 58.8
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 4.0e-41 172.2 200 59.0
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 4.0e-41 172.2 201 58.7
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 8.8e-41 171.0 174 58.6
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 1.5e-40 170.2 199 58.3
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 2.0e-40 169.9 200 56.5
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 2.0e-40 169.9 198 58.6
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 2.2e-39 166.4 192 57.8
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 6.3e-39 164.9 186 59.7
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 2.4e-38 162.9 165 63.6
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 1.0e-36 157.5 195 53.8
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 5.0e-36 155.2 196 52.0
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 8.6e-36 154.5 174 52.3
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 1.9e-35 153.3 155 58.7
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 4.4e-32 142.1 115 71.3
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 1.3e-31 140.6 194 50.5
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 2.8e-31 139.4 171 56.7
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 4.9e-31 138.7 191 50.3
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 6.3e-31 138.3 191 50.3
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 1.1e-30 137.5 115 69.6
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 4.1e-30 135.6 170 51.2
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.0e-28 131.0 142 51.4
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 2.9e-28 129.4 200 42.0
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.1e-27 127.5 168 46.4
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 4.7e-26 122.1 141 51.1
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 1.4e-25 120.6 121 56.2
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 7.8e-21 104.8 164 50.6
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.0e-20 104.4 129 52.7
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 3.0e-20 102.8 125 51.2
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 8.6e-20 101.3 150 45.3
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.5e-19 100.5 179 44.7
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 1.9e-19 100.1 175 40.6
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.1e-18 96.7 60 80.0
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 2.1e-18 96.7 139 43.9
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 2.8e-18 96.3 77 68.8
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 6.2e-18 95.1 160 43.8
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 2.3e-17 93.2 89 69.7
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 8.3e-15 84.7 95 52.6
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 3.5e-13 79.3 122 41.8
Cre10.g452100 Chlamydomonas reinhardtii HOM05D004549 ORTHO05D005390 1.3e-07 60.8 165 31.5
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 1.3e-07 60.8 167 34.1


User provided reference genes

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