Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 5.0e-102 374.4 185 100.0
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 5.8e-82 307.8 181 79.0
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 2.2e-81 305.8 181 79.0
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 4.9e-81 304.7 184 77.7
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 6.4e-81 304.3 178 79.8
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 6.4e-81 304.3 181 78.5
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 1.1e-80 303.5 184 78.3
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 1.4e-80 303.1 181 78.5
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 2.4e-80 302.4 176 81.8
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 2.4e-80 302.4 181 77.3
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 5.4e-80 301.2 181 78.5
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 5.4e-80 301.2 181 77.3
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.2e-79 300.1 181 77.3
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.2e-79 300.1 183 76.0
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.2e-79 300.1 179 78.2
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.2e-79 300.1 183 77.6
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 2.1e-79 299.3 181 77.3
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 2.1e-79 299.3 181 76.8
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.1e-79 299.3 181 76.8
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.1e-79 299.3 181 75.7
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 2.7e-79 298.9 181 76.8
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 2.7e-79 298.9 181 76.8
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.7e-79 298.9 181 76.8
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 4.6e-79 298.1 177 78.5
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 6.0e-79 297.7 181 78.5
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 6.0e-79 297.7 181 76.2
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 7.8e-79 297.4 178 75.8
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 7.8e-79 297.4 181 77.3
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 7.8e-79 297.4 181 78.5
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 1.3e-78 296.6 179 76.5
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 1.3e-78 296.6 181 76.8
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.7e-78 296.2 181 75.7
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.3e-78 295.8 181 74.6
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 2.3e-78 295.8 181 75.7
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 3.0e-78 295.4 181 75.7
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 3.9e-78 295.0 183 76.0
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 6.6e-78 294.3 181 74.6
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 6.6e-78 294.3 183 74.3
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 8.7e-78 293.9 176 77.8
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 8.7e-78 293.9 176 77.8
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.1e-77 293.5 181 75.7
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.1e-77 293.5 181 75.7
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 1.1e-77 293.5 181 75.7
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 1.1e-77 293.5 181 74.6
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 1.1e-77 293.5 181 74.6
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.5e-77 293.1 181 74.6
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.5e-77 293.1 181 74.6
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.5e-77 293.1 181 74.0
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.5e-77 293.1 181 74.0
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 1.5e-77 293.1 181 75.7
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 1.9e-77 292.7 181 74.6
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 2.5e-77 292.4 181 74.6
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 3.3e-77 292.0 177 78.0
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 3.3e-77 292.0 181 75.7
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 3.3e-77 292.0 183 73.8
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 4.3e-77 291.6 181 75.1
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.3e-77 291.6 181 74.0
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 4.3e-77 291.6 181 74.0
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.6e-77 291.2 181 74.0
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 5.6e-77 291.2 183 73.8
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 7.3e-77 290.8 181 75.7
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 7.3e-77 290.8 181 75.7
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.3e-76 290.0 176 75.6
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 3.6e-76 288.5 181 75.1
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 4.8e-76 288.1 181 74.0
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 8.1e-76 287.3 181 75.7
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 1.4e-75 286.6 181 72.9
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 5.3e-75 284.6 178 73.6
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 6.9e-75 284.3 181 73.5
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 9.0e-75 283.9 181 72.4
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 1.5e-74 283.1 181 72.4
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 2.6e-74 282.3 181 71.8
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 2.6e-74 282.3 181 74.0
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 7.6e-74 280.8 181 73.5
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 7.6e-74 280.8 181 71.8
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 9.9e-74 280.4 178 74.2
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.3e-73 280.0 181 71.3
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 2.2e-73 279.3 181 72.4
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 3.8e-73 278.5 177 74.6
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 4.9e-73 278.1 181 70.7
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 4.9e-73 278.1 181 71.3
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 6.4e-73 277.7 183 71.6
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 6.4e-73 277.7 181 71.8
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 8.4e-73 277.3 181 71.3
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 8.4e-73 277.3 181 71.3
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 1.4e-72 276.6 178 73.0
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 1.4e-72 276.6 181 71.8
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 1.9e-72 276.2 181 71.3
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 2.4e-72 275.8 181 69.6
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 2.4e-72 275.8 181 69.6
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 2.4e-72 275.8 181 72.4
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 3.2e-72 275.4 181 69.1
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 4.2e-72 275.0 177 71.2
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 7.1e-72 274.2 183 70.5
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 7.1e-72 274.2 178 73.0
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 9.3e-72 273.9 179 72.1
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 9.3e-72 273.9 181 69.1
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 2.1e-71 272.7 181 71.3
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 4.6e-71 271.6 183 68.9
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 7.9e-71 270.8 182 69.2
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.3e-70 270.0 181 70.7
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 3.0e-70 268.9 183 68.9
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 5.1e-70 268.1 181 70.2
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 5.1e-70 268.1 181 70.2
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 5.1e-70 268.1 181 70.2
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 5.1e-70 268.1 178 70.8
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 8.7e-70 267.3 181 69.6
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 8.7e-70 267.3 181 69.6
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 1.1e-69 266.9 180 68.9
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.1e-69 266.9 182 68.1
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 2.5e-69 265.8 177 71.2
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 4.3e-69 265.0 176 69.9
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 1.3e-68 263.5 182 67.0
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 1.6e-68 263.1 178 69.1
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 2.8e-68 262.3 183 66.1
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 2.8e-68 262.3 182 67.6
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 2.8e-68 262.3 169 73.4
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 8.1e-68 260.8 190 68.4
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 1.8e-67 259.6 176 65.9
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 4.0e-67 258.5 178 68.0
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 3.4e-66 255.4 182 67.6
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 1.3e-65 253.4 180 68.3
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 1.6e-63 246.5 178 64.0
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 1.3e-62 243.4 181 65.2
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 3.0e-62 242.3 181 61.3
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 3.0e-62 242.3 179 64.2
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 6.7e-62 241.1 179 63.1
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 1.5e-61 240.0 185 62.2
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.3e-60 236.9 177 65.5
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 1.9e-56 223.0 180 58.9
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 6.7e-54 214.5 163 65.6
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 8.7e-54 214.2 182 59.3
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 2.5e-53 212.6 181 60.2
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 5.3e-51 204.9 182 58.8
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.0e-46 190.7 116 74.1
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 3.9e-46 188.7 195 52.8
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.6e-44 183.3 117 70.9
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 8.5e-41 171.0 155 55.5
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 6.1e-39 164.9 177 43.5
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.4e-27 127.1 99 60.6
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.8e-27 126.7 109 57.8
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.2e-25 119.8 75 76.0
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 3.0e-14 82.8 105 44.8
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 6.8e-14 81.6 50 72.0
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 9.8e-13 77.8 55 63.6
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 1.0e-09 67.8 44 72.7


User provided reference genes

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