Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.4e-248 861.7 432 100.0
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 4.5e-234 814.3 411 99.8
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 7.9e-215 750.4 411 91.0
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 6.1e-167 591.3 413 71.4
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 2.0e-162 576.2 412 69.9
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 2.9e-161 572.4 414 69.1
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 2.5e-160 569.3 414 67.9
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.4e-158 563.5 412 68.2
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 2.3e-158 562.8 413 68.0
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 1.2e-157 560.5 413 67.3
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 1.3e-156 557.0 418 65.6
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 1.7e-156 556.6 411 66.2
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 1.7e-156 556.6 418 67.2
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 1.7e-156 556.6 413 67.3
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 8.3e-156 554.3 413 66.3
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 8.3e-156 554.3 411 65.9
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 1.9e-155 553.1 419 65.6
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 2.4e-155 552.7 413 66.1
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 5.4e-155 551.6 413 66.8
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 1.2e-154 550.4 410 66.1
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 1.2e-154 550.4 410 68.5
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 1.6e-154 550.1 412 66.5
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 2.0e-154 549.7 414 66.2
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 2.7e-154 549.3 412 65.8
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 3.5e-154 548.9 423 65.2
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 1.0e-153 547.4 409 67.0
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 2.3e-153 546.2 414 64.5
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 3.0e-153 545.8 418 65.8
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 8.6e-153 544.3 415 65.5
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 8.6e-153 544.3 413 65.6
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 2.5e-152 542.7 416 65.9
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 3.3e-152 542.3 416 65.9
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 3.3e-152 542.3 415 65.1
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 3.3e-152 542.3 413 65.6
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 4.3e-152 542.0 415 65.3
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 7.3e-152 541.2 411 64.2
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 2.1e-151 539.7 415 65.1
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 4.7e-151 538.5 413 64.9
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 4.7e-151 538.5 414 65.5
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 8.0e-151 537.7 411 65.0
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 1.1e-150 537.3 415 64.1
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 1.1e-150 537.3 415 64.1
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 2.3e-150 536.2 432 64.1
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 5.2e-150 535.0 419 64.2
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 6.8e-150 534.6 422 65.6
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 8.9e-150 534.3 413 64.4
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 2.6e-149 532.7 410 65.1
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 2.6e-149 532.7 409 65.8
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 2.6e-149 532.7 409 65.8
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 4.9e-148 528.5 427 62.8
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 4.9e-148 528.5 427 62.8
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 8.3e-148 527.7 425 63.5
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 1.4e-147 526.9 413 64.2
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 2.4e-147 526.2 415 63.1
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 3.5e-146 522.3 413 63.4
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 1.3e-145 520.4 412 63.6
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 2.3e-145 519.6 413 63.2
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 3.9e-145 518.8 409 63.3
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 3.3e-144 515.8 409 62.1
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 9.5e-144 514.2 424 62.3
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 1.2e-143 513.8 416 63.0
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 1.2e-143 513.8 416 63.0
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 3.6e-143 512.3 417 62.4
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 1.1e-142 510.8 408 62.5
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 1.4e-142 510.4 422 61.4
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 1.8e-142 510.0 418 60.8
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 1.8e-142 510.0 418 61.5
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 2.3e-142 509.6 418 60.8
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 6.8e-142 508.1 421 61.0
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.8e-142 508.1 417 62.8
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 6.8e-142 508.1 413 63.0
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 6.8e-142 508.1 419 61.6
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 8.9e-142 507.7 418 60.3
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 1.5e-141 506.9 408 62.3
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 2.0e-141 506.5 408 62.7
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 2.0e-141 506.5 413 62.2
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.4e-141 505.8 418 62.7
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 4.4e-141 505.4 411 62.0
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 7.5e-141 504.6 413 62.0
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 2.2e-140 503.1 416 62.5
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.2e-140 503.1 416 62.5
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 2.4e-139 499.6 418 60.3
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.2e-139 499.2 419 61.8
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 9.2e-139 497.7 422 60.0
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 9.2e-139 497.7 419 60.4
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 6.0e-138 495.0 422 60.0
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 1.3e-137 493.8 417 61.6
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 2.3e-137 493.0 417 60.0
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 6.6e-137 491.5 408 60.0
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 8.6e-137 491.1 425 59.3
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 8.6e-137 491.1 425 59.3
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 8.6e-137 491.1 418 60.8
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 3.3e-136 489.2 422 59.5
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 7.3e-136 488.0 426 58.7
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 7.3e-136 488.0 426 58.7
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 4.7e-135 485.3 423 59.3
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 6.2e-135 485.0 520 51.2
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 1.4e-134 483.8 418 59.8
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 1.5e-133 480.3 403 59.6
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 9.9e-133 477.6 424 59.7
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 6.4e-132 474.9 419 58.2
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 9.2e-131 471.1 422 57.6
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 9.2e-131 471.1 415 58.6
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 6.6e-129 464.9 423 57.2
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 1.6e-127 460.3 425 58.1
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 1.3e-124 450.7 410 59.0
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 2.2e-124 449.9 424 55.7
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 3.9e-121 439.1 410 56.1
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 1.0e-113 414.5 355 58.9
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 1.0e-108 397.9 411 52.8
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 1.3e-105 387.5 415 51.8
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 5.1e-105 385.6 306 62.1
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 8.7e-105 384.8 415 51.8
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.4e-104 381.7 410 51.5
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 6.5e-100 368.6 420 50.2
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 2.3e-97 360.1 420 48.1
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 2.2e-95 353.6 415 45.5
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 4.8e-95 352.4 413 47.9
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 6.3e-95 352.1 416 48.3
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 1.1e-94 351.3 418 45.9
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 6.9e-94 348.6 415 48.4
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 1.5e-93 347.4 410 48.5
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.5e-92 342.0 410 48.3
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 3.9e-89 332.8 278 59.7
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 4.3e-88 329.3 416 47.8
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 2.6e-85 320.1 290 56.2
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 9.7e-80 301.6 228 64.5
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 1.2e-74 284.6 408 43.9
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.8e-73 280.8 282 52.5
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 2.6e-64 250.4 414 36.5
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 8.3e-63 245.4 421 41.3
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 1.6e-61 241.1 398 39.4
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 8.8e-57 225.3 148 74.3
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.8e-55 220.3 229 52.0
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.7e-50 203.0 220 50.5
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.7e-44 184.5 129 71.3
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 4.3e-43 179.9 137 65.7
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 2.3e-41 174.1 392 30.6
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 2.7e-37 160.6 252 43.7
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 1.1e-33 148.7 109 69.7
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 5.8e-32 142.9 106 64.2
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 2.2e-31 141.0 106 65.1
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.9e-30 137.9 120 60.8
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 6.6e-28 129.4 91 70.3
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 2.1e-26 124.4 408 27.9
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 8.9e-25 119.0 203 36.9
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 7.3e-19 99.4 262 30.5
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.4e-16 90.5 65 67.7
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 3.4e-16 90.5 69 69.6
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 6.9e-09 66.2 67 50.7
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.0e-09 65.9 106 41.5


User provided reference genes

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