Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 0.0e+00 1221.1 616 100.0
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 0.0e+00 1195.6 616 97.6
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 8.7e-292 1006.5 566 87.8
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 2.1e-290 1001.9 558 87.8
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.4e-289 999.2 604 81.3
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 6.9e-289 996.9 604 81.1
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 9.0e-289 996.5 558 87.3
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 1.2e-288 996.1 583 84.0
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.5e-288 995.7 586 83.6
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 2.0e-288 995.3 583 84.2
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 3.4e-288 994.6 584 84.1
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.0e-287 993.0 558 87.1
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 1.7e-287 992.3 558 86.2
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 1.1e-286 989.6 576 83.7
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 1.1e-286 989.6 583 83.7
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.1e-286 989.6 593 82.1
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.9e-286 988.8 599 81.3
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 5.5e-286 987.3 595 82.5
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 7.1e-286 986.9 604 81.5
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 1.6e-285 985.7 595 82.0
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 1.6e-285 985.7 558 85.8
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.1e-285 985.3 549 88.7
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 2.7e-285 984.9 593 81.5
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 6.1e-285 983.8 558 85.1
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 6.1e-285 983.8 558 85.1
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 7.9e-285 983.4 599 81.0
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 3.9e-284 981.1 594 81.0
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 8.7e-284 979.9 579 83.8
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 1.5e-283 979.2 557 85.3
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.9e-283 978.8 558 85.7
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 2.5e-283 978.4 593 80.9
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 2.5e-283 978.4 597 81.6
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 2.5e-283 978.4 587 81.4
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 3.3e-283 978.0 594 82.2
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 4.3e-283 977.6 569 84.4
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 9.7e-283 976.5 557 84.6
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 2.2e-282 975.3 583 82.2
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 3.7e-282 974.5 566 84.6
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 3.7e-282 974.5 603 81.1
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 3.7e-282 974.5 568 84.5
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 3.7e-282 974.5 558 84.9
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 4.8e-282 974.2 588 81.3
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 6.3e-282 973.8 565 83.5
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 1.4e-281 972.6 591 80.7
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 1.8e-281 972.2 558 84.2
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 2.4e-281 971.8 558 84.4
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.4e-281 971.8 558 84.8
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 2.4e-281 971.8 576 83.5
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 4.1e-281 971.1 558 84.6
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 4.1e-281 971.1 558 84.6
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.1e-281 971.1 574 82.9
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.1e-281 971.1 616 78.2
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 6.9e-281 970.3 568 84.3
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 6.9e-281 970.3 577 82.3
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.2e-280 969.5 618 78.8
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 1.2e-280 969.5 563 84.2
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 2.0e-280 968.8 558 84.2
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 2.6e-280 968.4 576 82.3
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.6e-280 968.4 558 84.4
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 2.6e-280 968.4 580 82.2
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 3.4e-280 968.0 616 78.9
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 4.5e-280 967.6 558 83.9
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 7.7e-280 966.8 579 81.7
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 7.7e-280 966.8 616 77.8
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 7.7e-280 966.8 558 84.2
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 7.7e-280 966.8 587 80.6
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 1.0e-279 966.5 562 83.8
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 3.8e-279 964.5 577 81.6
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 5.0e-279 964.1 593 80.4
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 6.5e-279 963.8 618 77.7
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 8.5e-279 963.4 572 82.5
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 1.1e-278 963.0 558 82.8
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 1.4e-278 962.6 594 79.3
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.9e-278 962.2 591 81.4
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 3.2e-278 961.4 630 77.1
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 4.2e-278 961.1 588 81.1
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 9.4e-278 959.9 577 82.0
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 2.1e-277 958.7 567 83.2
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 2.1e-277 958.7 568 82.9
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 2.7e-277 958.4 588 81.3
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 6.1e-277 957.2 593 80.4
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 6.1e-277 957.2 616 77.3
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 6.1e-277 957.2 566 82.3
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 7.9e-277 956.8 592 79.7
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 1.4e-276 956.1 586 80.9
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 1.4e-276 956.1 586 80.9
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 3.0e-276 954.9 582 81.1
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 8.8e-276 953.4 558 82.6
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 2.0e-275 952.2 558 82.4
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 2.5e-275 951.8 557 83.3
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 4.3e-275 951.0 592 79.9
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 4.3e-275 951.0 592 79.9
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 4.3e-275 951.0 568 82.6
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 5.7e-275 950.7 590 80.0
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 7.4e-275 950.3 585 80.5
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 9.7e-275 949.9 558 83.3
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 2.8e-274 948.3 558 83.2
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 2.8e-274 948.3 558 83.2
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 2.8e-274 948.3 577 81.5
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 4.8e-274 947.6 558 82.8
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 4.8e-274 947.6 558 82.6
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 1.1e-273 946.4 599 78.8
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 2.4e-273 945.3 663 73.8
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 3.1e-273 944.9 572 81.1
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.6e-272 941.8 575 80.0
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 4.5e-272 941.0 635 75.7
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 6.5e-271 937.2 572 80.9
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 1.6e-269 932.6 607 77.1
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 3.9e-268 927.9 527 84.8
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 3.3e-267 924.9 558 79.0
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.8e-266 921.8 555 80.5
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 6.5e-263 910.6 558 81.5
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.0e-260 903.3 557 77.6
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 2.6e-259 898.7 557 75.8
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.3e-259 898.3 558 78.9
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 9.1e-257 890.2 516 85.7
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 1.9e-254 882.5 559 75.8
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 4.2e-254 881.3 575 77.6
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 3.0e-252 875.2 539 79.8
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.2e-251 873.2 527 80.3
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 2.3e-244 849.0 580 74.7
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 5.9e-240 834.3 557 71.5
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 2.8e-237 825.5 565 70.6
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.0e-236 823.5 558 72.8
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.9e-234 814.7 572 73.8
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 5.6e-222 774.6 490 77.6
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 9.2e-217 757.3 479 76.8
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 9.2e-217 757.3 490 77.6
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 4.6e-216 755.0 544 66.2
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 1.4e-212 743.4 433 84.8
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 1.7e-210 736.5 454 80.4
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.2e-209 732.3 490 75.9
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.7e-208 729.2 426 84.5
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.4e-204 716.8 562 62.1
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 2.4e-204 716.1 433 80.6
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 6.4e-202 708.0 422 81.5
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.1e-188 662.5 403 81.6
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 1.1e-172 610.9 433 72.5
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.2e-163 580.9 572 51.4
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.7e-154 550.4 312 85.9
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 2.0e-139 500.4 384 69.0
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 2.8e-125 453.4 339 72.0
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 9.2e-116 421.8 263 77.2
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 4.0e-103 379.8 277 67.1
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 7.1e-92 342.4 216 77.3
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 4.6e-75 286.6 184 78.3
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.3e-74 285.0 149 92.6
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 1.4e-71 275.0 560 32.1
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 4.6e-67 260.0 150 82.7
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 1.1e-57 228.8 131 82.4
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 3.3e-57 227.3 133 78.2
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 7.6e-54 216.1 126 81.0
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 5.7e-49 199.9 115 80.9
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 1.7e-48 198.4 114 80.7
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 2.8e-48 197.6 109 88.1
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 2.8e-48 197.6 185 58.9
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 5.3e-47 193.4 116 84.5
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.9e-44 184.9 115 74.8
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.2e-44 183.7 136 68.4
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 7.2e-44 183.0 105 81.0
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 3.1e-39 167.5 138 65.9
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 4.1e-39 167.2 252 45.2
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 3.8e-37 160.6 192 51.0
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.7e-32 145.2 111 66.7
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 2.5e-28 131.3 117 59.8
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 5.2e-26 123.6 61 93.4
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 2.8e-24 117.9 70 75.7
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 5.5e-20 103.6 56 91.1
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 8.0e-19 99.8 212 33.0
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 2.4e-15 88.2 180 30.0
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.4e-15 88.2 81 60.5
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 3.5e-14 84.3 67 61.2
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 3.6e-11 74.3 53 69.8


User provided reference genes

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