Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G03480 Aquilegia oxysepala HOM05D000001 ORTHO05D000501 6.0e-140 500.7 238 100.0
Medtr2g021910 Medicago truncatula HOM05D000001 ORTHO05D000501 7.1e-16 88.6 163 30.7
VMungo0485G0002 Vigna mungo HOM05D000001 ORTHO05D000501 6.0e-15 85.5 130 33.1
Phvul.004G064100 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 3.9e-14 82.8 131 32.8
VMungo0720G1318 Vigna mungo HOM05D000001 ORTHO05D000501 5.1e-14 82.4 130 31.5
Aqoxy5G04155 Aquilegia oxysepala HOM05D000001 ORTHO05D000501 4.8e-12 75.9 172 27.3
Dinv33762 Davidia involucrata HOM05D000425 ORTHO05D000373 1.1e-11 74.7 124 32.3
SEGI_24784 Sequoiadendron giganteum HOM05D000001 ORTHO05D000501 4.0e-11 72.8 140 31.4
unitig_26.g10300 Utricularia gibba HOM05D000001 ORTHO05D000501 4.0e-11 72.8 138 28.3
Sed0003120 Sechium edule HOM05D000001 ORTHO05D000501 1.5e-10 70.9 176 26.1
MSTRG.703 Avicennia marina HOM05D000001 ORTHO05D000501 2.0e-10 70.5 138 27.5
arahy.Tifrunner.gnm1.ann1.YYPI83 Arachis hypogaea HOM05D000001 ORTHO05D000501 2.6e-10 70.1 144 27.1
Sed0017935 Sechium edule HOM05D000001 ORTHO05D000501 2.6e-10 70.1 171 27.5
Glyma.20G036200 Glycine max HOM05D000001 ORTHO05D000501 3.4e-10 69.7 150 30.7
MBI05_g34369_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 3.4e-10 69.7 144 29.9
Medtr2g021750 Medicago truncatula HOM05D000172 ORTHO05D004529 3.4e-10 69.7 135 30.4
Phvul.004G056000 Phaseolus vulgaris HOM05D000001 ORTHO05D022409 3.4e-10 69.7 125 29.6
Pp3c2_17290 Physcomitrium patens HOM05D000001 ORTHO05D000501 3.4e-10 69.7 140 29.3
ClCG05G024250 Citrullus lanatus HOM05D000001 ORTHO05D000501 4.5e-10 69.3 141 31.2
Aqoxy5G04163 Aquilegia oxysepala HOM05D000001 ORTHO05D021353 5.8e-10 68.9 148 29.1
Cc11_g12940 Coffea canephora HOM05D000001 ORTHO05D000501 7.6e-10 68.6 138 29.0
MBI05_g36699_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 7.6e-10 68.6 144 30.6
Psat0s2608g0040 Pisum sativum HOM05D000001 ORTHO05D000501 7.6e-10 68.6 176 24.4
TPR.G30030 Trifolium pratense HOM05D000820 ORTHO05D000760 7.6e-10 68.6 116 30.2
CAN.G736.4 Capsicum annuum HOM05D000001 ORTHO05D000501 1.0e-09 68.2 140 27.9
ClCG09G018200 Citrullus lanatus HOM05D000001 ORTHO05D000501 1.0e-09 68.2 172 27.3
Medtr2g021830 Medicago truncatula HOM05D000001 ORTHO05D000501 1.3e-09 67.8 126 28.6
Nitab4.5_0003950g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000501 1.3e-09 67.8 140 29.3
Aqoxy2G00677 Aquilegia oxysepala HOM05D045314 ORTHO05D000501 1.7e-09 67.4 81 37.0
Cfa007559 Carpinus fangiana HOM05D000001 ORTHO05D000501 1.7e-09 67.4 175 26.9
SGA_v2.0_scaffold302G47813 Striga asiatica HOM05D000001 ORTHO05D000501 1.7e-09 67.4 142 31.7
Cc11_g12970 Coffea canephora HOM05D000001 ORTHO05D000501 2.2e-09 67.0 143 31.5
MELO3C012099.2 Cucumis melo HOM05D000001 ORTHO05D000501 2.2e-09 67.0 141 31.2
Oeu054869.1 Olea europaea HOM05D000001 ORTHO05D000501 2.2e-09 67.0 141 30.5
Pp3c1_22510 Physcomitrium patens HOM05D000001 ORTHO05D000501 2.2e-09 67.0 141 31.2
AUR62005800 Chenopodium quinoa HOM05D000001 ORTHO05D000501 2.9e-09 66.6 136 30.1
Eucgr.G02499 Eucalyptus grandis HOM05D000001 ORTHO05D000501 2.9e-09 66.6 138 30.4
QL02p078664 Quercus lobata HOM05D000001 ORTHO05D000501 2.9e-09 66.6 141 32.6
arahy.Tifrunner.gnm1.ann1.E6ZCRX Arachis hypogaea HOM05D000001 ORTHO05D000501 3.8e-09 66.2 144 29.2
Psat5g059080 Pisum sativum HOM05D000001 ORTHO05D000501 3.8e-09 66.2 132 28.0
Sopen05g003790 Solanum pennellii HOM05D000001 ORTHO05D000501 3.8e-09 66.2 140 27.1
TAR371G0300 Trochodendron aralioides HOM05D000001 ORTHO05D000501 3.8e-09 66.2 141 31.2
MSTRG.702 Avicennia marina HOM05D000001 ORTHO05D000501 4.9e-09 65.9 140 28.6
AUR62005793 Chenopodium quinoa HOM05D000001 ORTHO05D000501 4.9e-09 65.9 144 27.8
Peaxi162Scf00023g00239 Petunia axillaris HOM05D000001 ORTHO05D000501 4.9e-09 65.9 140 27.9
Psat7g148720 Pisum sativum HOM05D000001 ORTHO05D000501 4.9e-09 65.9 165 24.2
CANSAT78G2287 Cannabis sativa HOM05D000001 ORTHO05D000501 6.4e-09 65.5 141 29.1
CsaV3_5G032730 Cucumis sativus L. HOM05D000001 ORTHO05D000501 6.4e-09 65.5 138 30.4
Oeu022759.1 Olea europaea HOM05D000001 ORTHO05D000501 6.4e-09 65.5 138 29.0
Solyc05g007940.3 Solanum lycopersicum HOM05D000001 ORTHO05D000501 6.4e-09 65.5 140 27.1
Ah.03g135030 Amaranthus hybridus HOM05D000001 ORTHO05D000501 8.4e-09 65.1 139 28.1
Ciclev10032651m.g Citrus clementina HOM05D000001 ORTHO05D000501 8.4e-09 65.1 141 30.5
Glyma.03G194500 Glycine max HOM05D000001 ORTHO05D000501 8.4e-09 65.1 147 25.2
Gohir.D12G167800 Gossypium hirsutum HOM05D000001 ORTHO05D000501 8.4e-09 65.1 158 30.4
Gorai.008G180700 Gossypium raimondii HOM05D000001 ORTHO05D000501 8.4e-09 65.1 158 30.4
arahy.Tifrunner.gnm1.ann1.VQ1W7S Arachis hypogaea HOM05D000001 ORTHO05D000501 1.1e-08 64.7 144 28.5
CsaV3_3G041400 Cucumis sativus L. HOM05D000001 ORTHO05D000501 1.1e-08 64.7 153 27.5
CsaV3_5G038060 Cucumis sativus L. HOM05D000001 ORTHO05D000501 1.1e-08 64.7 136 27.2
Os07g0629300 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000501 1.1e-08 64.7 106 33.0
AT1G26820 Arabidopsis thaliana HOM05D000001 ORTHO05D000501 1.4e-08 64.3 158 29.1
AUR62032783 Chenopodium quinoa HOM05D000001 ORTHO05D000501 1.4e-08 64.3 144 27.8
AUR62032789 Chenopodium quinoa HOM05D000001 ORTHO05D000501 1.4e-08 64.3 136 29.4
PSO017G5772 Papaver somniferum HOM05D000001 ORTHO05D000501 1.4e-08 64.3 141 30.5
Thecc.09G278400 Theobroma cacao HOM05D008337 ORTHO05D000501 1.4e-08 64.3 202 24.8
Lsat_1_v5_gn_8_52600 Lactuca sativa HOM05D000001 ORTHO05D000501 1.9e-08 63.9 141 28.4
Phvul.004G050200 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 2.5e-08 63.5 124 25.0
Phvul.004G052000 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 2.5e-08 63.5 125 26.4
Aqoxy3G03393 Aquilegia oxysepala HOM05D000001 ORTHO05D000501 3.2e-08 63.2 146 29.5
ECA233G2882 Erigeron canadensis HOM05D000001 ORTHO05D000501 3.2e-08 63.2 138 29.7
Eucgr.G02498 Eucalyptus grandis HOM05D000001 ORTHO05D000501 3.2e-08 63.2 138 29.7
Lsat_1_v5_gn_8_52560 Lactuca sativa HOM05D000001 ORTHO05D000501 3.2e-08 63.2 141 29.8
Cfa000442 Carpinus fangiana HOM05D000001 ORTHO05D000501 4.2e-08 62.8 158 25.3
CiPaw.03G026000 Carya illinoinensis HOM05D000001 ORTHO05D000501 4.2e-08 62.8 126 28.6
ClCG10G015180 Citrullus lanatus HOM05D000001 ORTHO05D000501 4.2e-08 62.8 134 26.9
CsaV3_3G041380 Cucumis sativus L. HOM05D000001 ORTHO05D000501 4.2e-08 62.8 134 29.9
Gohir.A12G164700 Gossypium hirsutum HOM05D000001 ORTHO05D000501 4.2e-08 62.8 156 28.8
THA.LOC104822912 Tarenaya hassleriana HOM05D000001 ORTHO05D000501 4.2e-08 62.8 127 29.9
AL1G38770 Arabidopsis lyrata HOM05D000001 ORTHO05D000501 5.5e-08 62.4 127 29.9
ClCG10G015160 Citrullus lanatus HOM05D000001 ORTHO05D000501 5.5e-08 62.4 134 26.1
Medtr0129s0080 Medicago truncatula HOM05D000001 ORTHO05D000501 5.5e-08 62.4 178 26.4
Medtr3g030640 Medicago truncatula HOM05D000001 ORTHO05D000501 5.5e-08 62.4 131 29.8
TAR374G0598 Trochodendron aralioides HOM05D000001 ORTHO05D000501 5.5e-08 62.4 141 29.1
GSVIVG01019974001 Vitis vinifera HOM05D000001 ORTHO05D000501 5.5e-08 62.4 139 29.5
Medtr3g030660 Medicago truncatula HOM05D000001 ORTHO05D000501 7.1e-08 62.0 131 29.8
Medtr5g041095 Medicago truncatula HOM05D000001 ORTHO05D000501 7.1e-08 62.0 167 25.1
Os09g0537700 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000501 7.1e-08 62.0 93 33.3
Prupe.1G275300 Prunus persica HOM05D000001 ORTHO05D000501 7.1e-08 62.0 140 30.0
SalBow2G2128 Salvia bowleyana HOM05D000001 ORTHO05D000501 7.1e-08 62.0 87 31.0
FAN08G1779 Fragaria x ananassa HOM05D000001 ORTHO05D000501 9.3e-08 61.6 143 25.9
Lalb_Chr17g0340721 Lupinus albus HOM05D000001 ORTHO05D000501 9.3e-08 61.6 141 29.1
TPR.G39194 Trifolium pratense HOM05D000001 ORTHO05D000501 9.3e-08 61.6 127 28.3
HPP92_011249 Vanilla planifolia HOM05D000001 ORTHO05D000501 1.2e-07 61.2 127 29.1
Zm00001eb144680 Zea mays HOM05D000001 ORTHO05D000501 1.2e-07 61.2 211 28.4
arahy.Tifrunner.gnm1.ann1.M3W608 Arachis hypogaea HOM05D000001 ORTHO05D000501 1.6e-07 60.8 149 28.9
COL.COLO4_22959 Corchorus olitorius HOM05D000001 ORTHO05D000501 1.6e-07 60.8 125 30.4
Medtr5g040940 Medicago truncatula HOM05D000001 ORTHO05D000501 1.6e-07 60.8 139 27.3
Hund06135 Selenicereus undatus HOM05D000001 ORTHO05D000501 1.6e-07 60.8 130 30.0
arahy.Tifrunner.gnm1.ann1.47UL4M Arachis hypogaea HOM05D000001 ORTHO05D000501 2.1e-07 60.5 149 28.9
CANSAT25G2603 Cannabis sativa HOM05D000001 ORTHO05D000501 2.1e-07 60.5 164 28.0
AUR62032785 Chenopodium quinoa HOM05D000001 ORTHO05D000501 2.1e-07 60.5 86 34.9
ClCG10G019740 Citrullus lanatus HOM05D000001 ORTHO05D000501 2.1e-07 60.5 181 26.0
Eucgr.H00686 Eucalyptus grandis HOM05D000001 ORTHO05D000501 2.1e-07 60.5 151 28.5
Glyma.20G036100 Glycine max HOM05D000001 ORTHO05D000501 2.1e-07 60.5 125 29.6
Lj6C787G16 Lonicera japonica HOM05D000001 ORTHO05D000501 2.1e-07 60.5 125 30.4
Medtr0002s1200 Medicago truncatula HOM05D000001 ORTHO05D000501 2.1e-07 60.5 137 28.5
Medtr6g071425 Medicago truncatula HOM05D000001 ORTHO05D000501 2.1e-07 60.5 130 27.7
Sed0005369 Sechium edule HOM05D000001 ORTHO05D000501 2.1e-07 60.5 149 26.8
HanXRQChr08g0210951 Helianthus annuus HOM05D000001 ORTHO05D000501 2.7e-07 60.1 141 27.7
Lj2g0022200 Lotus japonicus HOM05D000001 ORTHO05D000501 2.7e-07 60.1 139 27.3
PSO013G0397 Papaver somniferum HOM05D000001 ORTHO05D000501 2.7e-07 60.1 141 27.0
Peaxi162Scf00222g00322 Petunia axillaris HOM05D000001 ORTHO05D000501 2.7e-07 60.1 141 31.2
Thhalv10008717m.g Eutrema salsugineum HOM05D000001 ORTHO05D000501 3.5e-07 59.7 127 29.1
Peaxi162Scf00222g00321 Petunia axillaris HOM05D000001 ORTHO05D000501 3.5e-07 59.7 140 28.6
Sed0012330 Sechium edule HOM05D054807 ORTHO05D000501 3.5e-07 59.7 139 25.9
Aa31LG7G8300 Aethionema arabicum HOM05D000777 ORTHO05D000595 4.6e-07 59.3 127 28.3
Lj6A787T60 Lonicera japonica HOM05D000001 ORTHO05D000501 4.6e-07 59.3 141 29.1
Manes.04G084851 Manihot esculenta HOM05D000001 ORTHO05D000501 4.6e-07 59.3 231 23.8
Nn4g25475 Nelumbo nucifera HOM05D000001 ORTHO05D000501 4.6e-07 59.3 130 29.2
Nn4g25478 Nelumbo nucifera HOM05D000001 ORTHO05D000501 4.6e-07 59.3 130 29.2
SGA_v2.0_scaffold53G19344 Striga asiatica HOM05D000001 ORTHO05D000501 4.6e-07 59.3 137 28.5
Medtr1g048200 Medicago truncatula HOM05D000001 ORTHO05D021353 6.0e-07 58.9 138 26.8
Nn4g25510 Nelumbo nucifera HOM05D000001 ORTHO05D000501 6.0e-07 58.9 130 29.2
CANSAT25G0184 Cannabis sativa HOM05D000001 ORTHO05D000501 7.9e-07 58.5 140 27.9
AUR62005796 Chenopodium quinoa HOM05D000001 ORTHO05D000501 7.9e-07 58.5 86 33.7
CsaV3_3G036320 Cucumis sativus L. HOM05D000001 ORTHO05D000501 7.9e-07 58.5 131 27.5
Gohir.D13G075400 Gossypium hirsutum HOM05D000001 ORTHO05D000501 7.9e-07 58.5 139 28.1
Gorai.013G086100 Gossypium raimondii HOM05D000001 ORTHO05D000501 7.9e-07 58.5 139 27.3
Phvul.002G170800 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 7.9e-07 58.5 125 28.8
Hund05876 Selenicereus undatus HOM05D000001 ORTHO05D000501 7.9e-07 58.5 146 27.4
Glyma.02G107900 Glycine max HOM05D000001 ORTHO05D000501 1.0e-06 58.2 141 28.4
PSO013G0311 Papaver somniferum HOM05D000001 ORTHO05D000501 1.0e-06 58.2 141 27.0
RcHm_v2.0_Chr6g0293901 Rosa chinensis HOM05D000001 ORTHO05D000501 1.0e-06 58.2 123 28.5
Sed0011654 Sechium edule HOM05D000001 ORTHO05D000501 1.0e-06 58.2 122 28.7
BcaC06g35117 Brassica carinata HOM05D000001 ORTHO05D000501 1.3e-06 57.8 127 29.1
A07p13140 Brassica napus HOM05D000001 ORTHO05D000501 1.3e-06 57.8 127 29.1
C07p19650 Brassica napus HOM05D000001 ORTHO05D000501 1.3e-06 57.8 127 29.1
BolC7t42482H Brassica oleracea HOM05D000001 ORTHO05D000501 1.3e-06 57.8 127 29.1
BraA07t29085Z Brassica rapa HOM05D000001 ORTHO05D000501 1.3e-06 57.8 127 29.1
Haze_14523 Corylus avellana HOM05D000181 ORTHO05D002783 1.3e-06 57.8 88 31.8
FAN18G3872 Fragaria x ananassa HOM05D000001 ORTHO05D000501 1.3e-06 57.8 145 25.5
Gorai.011G213300 Gossypium raimondii HOM05D008337 ORTHO05D000501 1.3e-06 57.8 157 28.7
MBI07_g00439_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 1.3e-06 57.8 123 26.8
TPR.G25368 Trifolium pratense HOM05D000001 ORTHO05D000501 1.3e-06 57.8 153 26.8
AagrBONN_evm.TU.Sc2ySwM_228.2278 Anthoceros agrestis HOM05D000001 ORTHO05D000501 1.8e-06 57.4 125 32.0
arahy.Tifrunner.gnm1.ann1.X5LBI6 Arachis hypogaea HOM05D000001 ORTHO05D000501 1.8e-06 57.4 87 34.5
FAN13G1741 Fragaria x ananassa HOM05D000001 ORTHO05D000501 1.8e-06 57.4 143 24.5
MBI04_g45134_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 1.8e-06 57.4 89 33.7
MBI07_g09537_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 1.8e-06 57.4 123 26.8
Sc04g0008080 Simmondsia chinensis HOM05D000001 ORTHO05D000501 1.8e-06 57.4 141 27.7
EL10Ac6g13212 Beta vulgaris HOM05D000001 ORTHO05D000501 2.3e-06 57.0 75 34.7
Cfa000496 Carpinus fangiana HOM05D000001 ORTHO05D000501 2.3e-06 57.0 152 26.3
Gohir.D10G190300 Gossypium hirsutum HOM05D008337 ORTHO05D000501 2.3e-06 57.0 186 26.9
MBI04_g43902_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 2.3e-06 57.0 89 33.7
Os07g0629900 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000501 2.3e-06 57.0 102 32.4
TWI31G1458 Tripterygium wilfordii HOM05D000001 ORTHO05D000501 2.3e-06 57.0 127 29.1
Dinv16652 Davidia involucrata HOM05D000001 ORTHO05D000501 3.0e-06 56.6 143 28.7
Medtr2g104330 Medicago truncatula HOM05D000001 ORTHO05D000501 3.0e-06 56.6 92 33.7
Sed0005085 Sechium edule HOM05D000001 ORTHO05D000501 3.0e-06 56.6 133 25.6
Medtr2g104300 Medicago truncatula HOM05D000001 ORTHO05D000501 3.9e-06 56.2 108 33.3
Medtr2g104370 Medicago truncatula HOM05D000001 ORTHO05D000501 3.9e-06 56.2 81 33.3
Sp1g21960 Schrenkiella parvula HOM05D000001 ORTHO05D000501 3.9e-06 56.2 127 28.3
Sed0013035 Sechium edule HOM05D000001 ORTHO05D000501 3.9e-06 56.2 128 26.6
VMungo0251G2849 Vigna mungo HOM05D000001 ORTHO05D000501 5.1e-06 55.8 125 28.0
Aqoxy7G03498 Aquilegia oxysepala HOM05D000001 ORTHO05D021350 8.7e-06 55.1 178 26.4
EL10Ac6g13213 Beta vulgaris HOM05D000001 ORTHO05D000501 8.7e-06 55.1 125 28.0
Nn3g21821 Nelumbo nucifera HOM05D000001 ORTHO05D000501 8.7e-06 55.1 97 32.0
Sed0020429 Sechium edule HOM05D000001 ORTHO05D000501 8.7e-06 55.1 85 30.6


User provided reference genes

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