Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 5147.0 2673 100.0
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 2794.6 2728 56.6
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 2369.0 2445 53.9
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2315.8 2673 50.4
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2302.3 2681 50.1
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 2280.4 2728 49.5
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 2272.7 2728 49.4
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 2169.4 2754 46.8
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2133.6 2676 46.7
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2091.2 2668 46.1
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2071.2 2672 46.6
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 2030.0 2744 45.1
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 2025.4 2694 45.6
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 2007.6 2671 45.0
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2000.3 2728 44.9
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1998.0 2656 45.7
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 1979.5 2666 44.8
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 1974.5 2661 44.4
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 1954.5 2679 44.8
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1953.7 2784 44.1
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1951.8 2721 43.6
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1924.4 2678 44.4
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1922.5 2674 44.2
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1895.2 2670 43.8
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1892.1 2664 43.2
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1885.5 2682 43.7
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1872.1 2654 42.5
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1865.5 2648 44.2
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1845.9 2648 42.8
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1826.2 2666 42.1
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1807.0 2273 46.2
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1784.2 2661 41.8
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1768.8 2661 41.6
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1761.1 2666 40.7
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1756.9 2659 41.1
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1755.3 2693 41.0
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1747.3 2686 40.2
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1744.2 2662 41.5
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1731.5 2640 40.5
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1729.1 2645 40.4
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1728.4 2750 40.1
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1726.1 2663 40.0
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1717.6 2701 40.1
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1711.4 2647 40.5
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1701.0 2675 40.0
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1697.6 2722 40.1
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1693.3 2653 40.4
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1689.1 2648 39.7
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1682.2 2638 41.1
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1678.7 2632 40.1
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1678.7 2648 40.3
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1677.5 2657 39.9
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1669.4 2633 40.8
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1667.9 2608 41.0
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1666.7 2639 40.6
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1657.5 2703 39.5
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1652.1 2639 40.4
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1648.3 2585 41.8
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1639.0 2672 40.1
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1632.8 2626 40.3
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1630.5 2642 39.7
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1624.4 2648 40.1
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1622.4 2664 39.7
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1604.3 2826 38.3
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1602.4 2661 39.9
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1600.5 2429 41.9
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1574.7 2683 38.9
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1561.6 2704 37.8
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1552.3 2705 39.0
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1496.5 2645 37.3
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1482.2 2737 37.3
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1464.1 2632 37.5
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1444.1 1838 46.1
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1440.6 2574 37.6
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1439.1 2643 36.5
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1426.0 2702 37.2
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1416.4 2367 38.9
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1416.0 2708 37.1
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1406.7 2742 36.9
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1402.5 2159 40.4
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1398.6 2741 36.6
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1373.6 2505 37.4
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1357.8 2075 40.4
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1327.4 2683 36.0
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1293.9 2335 36.5
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1280.0 2650 35.3
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1258.0 2668 35.5
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1251.1 2640 34.7
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1239.2 2087 37.5
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1203.0 2077 37.4
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1187.2 2282 36.4
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1146.7 1798 41.0
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1130.2 2144 36.6
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1078.2 1846 40.1
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 1.8e-311 1074.3 2281 34.9
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 5.3e-285 986.1 1735 36.0
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 5.1e-272 943.0 2567 31.5
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 3.7e-230 803.9 2634 28.7
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 3.6e-217 760.8 792 53.8
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 7.1e-213 746.5 939 49.1
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 1.6e-212 745.3 2812 26.3
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 1.2e-209 735.7 2842 26.7
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 5.8e-199 700.3 1176 39.1
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 8.4e-182 643.3 833 46.3
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 3.2e-181 641.3 2616 27.2
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 1.1e-170 606.3 2863 24.7
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.1e-169 602.1 595 55.0
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.1e-168 599.7 1257 35.1
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 4.2e-157 561.2 632 51.7
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 4.1e-152 544.7 767 42.6
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.3e-142 513.1 1170 33.0
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 4.1e-136 491.5 639 44.6
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 5.3e-136 491.1 746 40.9
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.7e-132 478.8 964 35.2
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.2e-127 463.4 1149 32.5
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 8.6e-118 430.6 751 39.3
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 4.0e-107 395.2 577 44.5
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.0e-106 392.9 423 53.4
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 3.5e-103 382.1 655 40.0
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 1.4e-99 370.2 548 41.2
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.9e-94 352.1 926 31.2
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 3.5e-87 328.9 318 56.3
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 6.6e-86 324.7 339 53.1
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.9e-77 296.6 473 40.6
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.2e-73 283.1 475 41.1
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 6.7e-62 245.0 397 40.1
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 1.9e-48 200.3 419 33.7
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 1.6e-47 197.2 339 36.6
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 7.9e-47 194.9 184 56.5
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 1.3e-44 187.6 182 54.4
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.2e-42 181.0 205 52.2
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 7.7e-42 178.3 505 30.9
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.9e-41 176.4 290 38.6
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 8.5e-41 174.9 263 45.2
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 5.7e-37 162.2 377 33.2
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 6.3e-36 158.7 149 59.7
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 8.5e-33 148.3 232 44.0
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.1e-32 147.9 223 38.6
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.7e-31 143.3 354 33.1
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 8.8e-30 138.3 378 32.0
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 1.1e-24 121.3 352 31.0
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 9.4e-24 118.2 122 52.5
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 6.1e-23 115.5 137 44.5
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.2e-18 101.3 271 33.2
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 2.2e-17 97.1 227 37.4
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 2.9e-17 96.7 145 38.6
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 5.0e-17 95.9 79 57.0
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 6.5e-17 95.5 251 29.9
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 3.2e-16 93.2 584 23.1
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 7.2e-16 92.0 72 62.5
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 9.4e-16 91.7 416 23.8
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 3.6e-15 89.7 83 54.2
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.4e-14 87.8 145 42.1
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.5e-13 84.3 333 25.5
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.5e-13 84.3 333 25.5
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 4.4e-13 82.8 113 45.1
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 9.8e-13 81.6 415 23.6
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.8e-12 80.1 157 38.9
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 8.3e-12 78.6 64 56.2
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 1.8e-11 77.4 149 40.3
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.8e-11 77.4 226 30.1
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 2.4e-11 77.0 89 42.7
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 2.7e-10 73.6 103 46.6
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 1.1e-08 68.2 104 43.3
SEGI_04455 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.5e-08 67.8 109 31.2
SEGI_13878 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 7.2e-08 65.5 155 34.8
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 2.8e-07 63.5 129 32.6
Atru.chr2.3366 Acer truncatum HOM05D003876 ORTHO05D004560 3.6e-07 63.2 97 36.1
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 5.2e-06 59.3 74 44.6
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 6.8e-06 58.9 184 26.6


User provided reference genes

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