Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 4.3e-240 834.3 449 100.0
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 4.0e-185 651.7 463 75.6
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.7e-181 639.0 460 75.2
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 7.3e-179 630.9 457 74.4
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.4e-177 626.7 454 73.3
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 2.3e-177 625.9 456 73.2
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 8.9e-177 624.0 457 72.9
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 1.7e-175 619.8 454 72.9
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 3.2e-174 615.5 459 72.1
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 4.6e-173 611.7 439 73.6
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.0e-172 610.5 457 71.3
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 6.6e-172 607.8 450 72.7
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 6.6e-172 607.8 457 71.3
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 1.5e-171 606.7 450 72.4
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.5e-171 606.7 450 72.2
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 3.3e-171 605.5 455 72.5
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 2.1e-170 602.8 457 72.0
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.8e-170 602.4 458 72.7
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.4e-169 600.1 451 69.6
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 2.3e-169 599.4 457 71.1
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 5.2e-169 598.2 441 71.9
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 6.8e-169 597.8 461 71.4
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 6.8e-169 597.8 457 71.3
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 6.8e-169 597.8 457 70.0
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 6.8e-169 597.8 459 71.2
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.7e-167 593.2 459 71.0
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.7e-167 593.2 459 72.1
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 3.7e-167 592.0 454 70.3
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 6.4e-167 591.3 454 70.0
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 2.4e-166 589.3 458 71.0
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 9.2e-166 587.4 458 71.8
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.2e-165 587.0 457 71.6
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.6e-165 586.6 453 68.4
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 2.1e-165 586.3 454 71.6
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 2.1e-165 586.3 461 69.6
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 1.0e-164 583.9 460 68.0
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 1.7e-164 583.2 460 67.4
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.3e-164 582.8 453 68.9
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.3e-164 582.8 454 69.6
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 3.9e-164 582.0 458 68.8
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 6.6e-164 581.3 459 70.2
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 8.6e-164 580.9 458 68.6
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 8.6e-164 580.9 457 70.0
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 1.1e-163 580.5 458 68.3
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.1e-163 580.5 454 67.8
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.1e-163 580.5 455 69.9
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 1.5e-163 580.1 453 69.3
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 8.1e-162 574.3 455 68.6
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 2.3e-161 572.8 459 69.5
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 6.8e-161 571.2 456 67.8
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.9e-161 570.9 457 68.7
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 2.0e-160 569.7 452 69.9
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 3.4e-160 568.9 458 67.9
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 5.8e-160 568.2 466 68.7
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 9.9e-160 567.4 447 68.7
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.7e-159 566.6 453 67.8
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 3.7e-159 565.5 459 67.3
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 1.1e-158 563.9 453 68.0
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 2.4e-158 562.8 462 68.8
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 3.2e-158 562.4 391 72.9
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 3.2e-158 562.4 391 72.9
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 5.4e-158 561.6 456 68.0
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 9.2e-158 560.8 452 66.2
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.6e-157 560.1 450 68.0
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 2.1e-157 559.7 453 69.1
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 2.7e-157 559.3 451 67.4
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 4.6e-157 558.5 462 68.0
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 5.1e-156 555.1 456 66.0
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.1e-155 553.9 449 67.0
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.9e-155 553.1 431 68.0
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.5e-155 552.7 430 69.1
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 5.6e-155 551.6 456 68.2
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 5.6e-155 551.6 456 68.2
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 7.3e-155 551.2 452 65.9
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 9.5e-155 550.8 431 67.7
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 9.5e-155 550.8 451 67.0
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 9.5e-155 550.8 362 77.1
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 1.6e-154 550.1 454 66.7
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 1.6e-154 550.1 438 68.5
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 2.1e-154 549.7 451 67.2
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 2.8e-154 549.3 451 67.2
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 6.2e-154 548.1 452 65.7
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 1.1e-153 547.4 431 67.3
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.1e-153 547.4 457 67.8
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 1.1e-153 547.4 437 67.7
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 2.4e-153 546.2 451 66.7
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 6.8e-153 544.7 451 66.5
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 6.8e-153 544.7 451 66.5
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 6.8e-153 544.7 451 66.5
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 6.8e-153 544.7 450 66.9
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 1.2e-152 543.9 450 65.8
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 4.9e-151 538.5 452 65.3
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 4.2e-150 535.4 457 64.1
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.0e-148 530.8 341 77.4
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.3e-148 529.6 458 64.4
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.3e-148 529.6 458 64.4
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 3.6e-146 522.3 365 72.9
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.1e-145 520.8 362 74.6
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 9.0e-145 517.7 401 69.3
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 5.6e-139 498.4 453 63.1
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.1e-133 479.9 457 60.6
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 6.0e-133 478.4 459 59.9
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 4.3e-131 472.2 311 77.5
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.8e-129 466.8 308 77.6
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 3.8e-127 459.1 307 78.2
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 4.3e-123 445.7 371 64.2
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.1e-118 431.0 376 59.0
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 1.9e-118 430.3 289 75.8
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.9e-118 430.3 371 61.2
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 3.9e-116 422.5 373 60.3
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 8.7e-116 421.4 366 60.1
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 5.7e-115 418.7 295 73.9
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.1e-113 414.5 282 75.9
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 4.1e-113 412.5 374 57.5
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 6.9e-113 411.8 278 73.7
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.0e-104 383.6 378 57.4
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 5.5e-102 375.6 368 57.3
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 9.4e-102 374.8 284 69.4
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 4.7e-101 372.5 378 55.8
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 3.0e-100 369.8 297 65.7
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.2e-96 357.8 339 57.8
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 5.9e-96 355.5 363 52.9
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 2.2e-95 353.6 424 50.0
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 9.1e-89 331.6 371 53.6
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 4.8e-82 309.3 375 47.5
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 2.0e-75 287.3 248 62.5
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 8.9e-68 261.9 332 50.9
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 1.7e-55 221.1 150 75.3
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 8.6e-47 192.2 345 39.7
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-42 178.3 164 57.3
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 2.5e-38 164.1 224 46.9
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.8e-36 157.9 112 67.9
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 2.3e-31 141.0 118 60.2
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.0e-31 140.6 90 74.4
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.4e-28 131.0 105 61.9
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.4e-28 131.0 171 45.0
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.2e-24 118.6 72 87.5
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.1e-21 107.8 87 71.3
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.5e-16 90.5 102 50.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 3.7e-13 80.5 75 53.3
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.0e-07 62.4 73 53.4
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 1.0e-07 62.4 170 33.5


User provided reference genes

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