Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 2607.4 1323 100.0
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 2158.3 1329 81.7
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 2143.6 1324 81.0
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1955.6 1186 81.5
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1872.4 1274 73.5
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1846.6 1328 69.9
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1718.7 1329 65.1
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1710.3 1331 64.7
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1697.2 1327 65.3
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1686.0 1331 64.2
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1676.8 1329 63.9
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1674.8 1332 64.3
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1670.2 1332 64.1
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1662.1 1328 63.3
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1661.7 1331 63.3
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1657.5 1330 63.7
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1657.1 1332 63.4
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1656.7 1332 63.6
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1656.3 1328 63.3
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1653.3 1331 63.4
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1648.3 1331 63.1
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1646.3 1329 62.8
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1637.5 1331 63.1
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1633.6 1332 62.0
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1625.9 1330 62.3
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 1624.8 1328 62.3
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1621.7 1332 61.9
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 1620.9 1332 61.9
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1619.4 1332 61.8
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1619.0 1326 61.7
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1618.6 1332 61.8
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1618.6 1329 62.2
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1615.9 1326 61.8
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1615.5 1332 61.7
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1612.8 1337 61.4
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1611.7 1331 61.8
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1609.0 1329 61.2
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1604.0 1333 61.4
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1604.0 1328 61.1
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1602.4 1318 61.2
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1597.4 1248 64.9
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1594.7 1329 61.0
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1589.7 1326 60.8
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1588.5 1326 61.2
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1588.2 1326 60.2
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1585.1 1277 62.3
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1582.0 1332 60.0
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1576.6 1326 60.8
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1576.2 1330 60.8
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1575.1 1248 64.0
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1574.7 1325 60.8
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1570.4 1352 59.5
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1568.9 1334 60.9
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1559.3 1331 59.6
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1557.7 1328 59.3
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1557.3 1328 59.6
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1555.4 1340 59.9
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1554.3 1331 60.3
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1549.6 1250 62.3
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1548.9 1328 59.6
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1546.9 1244 62.3
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1542.7 1334 59.4
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1536.9 1265 61.4
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1532.7 1343 59.0
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1522.7 1318 59.6
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1511.9 1325 58.9
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1510.4 1320 58.6
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1500.7 1322 57.9
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1499.6 1314 58.5
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1496.9 1329 58.7
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1493.0 1329 58.4
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1492.6 1330 57.7
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1486.9 1336 56.9
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1486.9 1330 57.1
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1485.3 1332 57.4
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1483.8 1329 57.9
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1480.3 1326 57.2
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1474.5 1327 57.3
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1473.8 1329 58.1
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1471.1 1322 57.4
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1448.7 1268 60.1
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1444.9 1100 66.1
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1444.9 1356 55.5
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1438.7 1100 65.3
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1404.4 1335 54.2
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1401.3 1327 55.2
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1384.4 1127 61.8
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1377.5 1341 53.0
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1353.6 1115 61.3
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1343.9 1097 62.1
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1330.9 1563 47.5
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1310.0 1159 58.2
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1293.1 1353 51.0
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1272.3 1322 51.2
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1260.4 1327 52.8
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1156.4 950 62.2
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1124.8 866 65.4
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 0.0e+00 1122.5 1317 49.6
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 0.0e+00 1086.2 1259 46.8
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 8.1e-311 1070.8 905 60.2
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 8.1e-303 1044.3 755 69.0
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 8.8e-257 891.3 1379 38.8
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 5.2e-233 812.4 1162 39.8
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 1.9e-227 793.9 1155 41.4
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 5.6e-227 792.3 1296 37.6
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 6.4e-223 778.9 858 48.5
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 4.4e-208 729.6 808 50.1
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 1.5e-155 555.1 1537 29.3
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 3.0e-132 477.6 460 55.2
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 3.7e-130 470.7 358 66.5
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 2.0e-120 438.3 376 58.8
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 1.6e-93 349.0 1431 26.9
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 6.2e-77 293.9 1632 24.0
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 5.8e-75 287.3 313 53.7
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 1.9e-73 282.3 247 55.5
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 3.4e-67 261.5 196 69.9
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 4.2e-65 254.6 1279 26.3
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 3.5e-64 251.5 307 44.6
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.4e-52 213.0 167 68.3
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 3.9e-47 194.9 1370 25.0
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 2.5e-46 192.2 139 75.5
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 5.0e-42 177.9 129 71.3
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 4.6e-40 171.4 238 40.8
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 2.5e-38 165.6 228 41.2
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 4.3e-38 164.9 119 71.4
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 1.3e-29 136.7 288 35.8


User provided reference genes

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