Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 1.0e-125 453.4 225 100.0
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 5.2e-93 344.7 229 76.9
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 8.3e-91 337.4 224 76.8
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 1.4e-74 283.5 170 77.6
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 2.8e-70 269.2 210 68.1
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 2.8e-70 269.2 210 68.1
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 4.7e-70 268.5 155 80.6
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 5.2e-69 265.0 182 72.0
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 8.9e-69 264.2 197 66.5
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 1.2e-68 263.8 157 80.9
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 1.5e-68 263.5 160 79.4
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 3.4e-68 262.3 186 68.3
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 3.4e-68 262.3 168 74.4
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 4.4e-68 261.9 157 78.3
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 4.4e-68 261.9 196 67.9
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 5.8e-68 261.5 163 76.7
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 5.8e-68 261.5 168 74.4
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 7.6e-68 261.2 156 80.1
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 7.6e-68 261.2 160 76.9
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 9.9e-68 260.8 213 66.2
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 9.9e-68 260.8 156 80.1
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 9.9e-68 260.8 155 78.7
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 9.9e-68 260.8 199 65.8
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 1.3e-67 260.4 156 79.5
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 1.3e-67 260.4 157 78.3
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 1.3e-67 260.4 184 69.0
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 1.3e-67 260.4 154 78.6
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 1.7e-67 260.0 155 78.1
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.7e-67 260.0 155 78.1
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.7e-67 260.0 155 78.1
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 1.7e-67 260.0 211 64.9
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 2.9e-67 259.2 187 68.4
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 3.8e-67 258.8 156 78.8
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 3.8e-67 258.8 185 67.6
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 3.8e-67 258.8 214 63.6
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 3.8e-67 258.8 165 74.5
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 4.9e-67 258.5 175 73.1
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 6.4e-67 258.1 154 79.9
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 6.4e-67 258.1 180 71.7
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 8.4e-67 257.7 156 78.2
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 8.4e-67 257.7 156 78.2
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 8.4e-67 257.7 156 78.2
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 8.4e-67 257.7 160 74.4
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 1.1e-66 257.3 170 72.4
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 1.1e-66 257.3 157 76.4
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 1.1e-66 257.3 157 79.0
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 1.4e-66 256.9 157 77.1
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 1.4e-66 256.9 157 76.4
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 1.9e-66 256.5 160 76.2
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 2.4e-66 256.1 160 75.6
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.4e-66 256.1 168 72.6
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 5.4e-66 255.0 170 71.8
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 5.4e-66 255.0 157 76.4
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 7.1e-66 254.6 187 68.4
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 9.3e-66 254.2 185 67.0
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 9.3e-66 254.2 155 76.8
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 9.3e-66 254.2 157 75.2
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 9.3e-66 254.2 181 70.2
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 1.2e-65 253.8 156 77.6
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 1.2e-65 253.8 157 76.4
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 2.1e-65 253.1 192 66.1
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 2.1e-65 253.1 191 64.4
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 2.1e-65 253.1 219 62.6
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 2.1e-65 253.1 162 74.1
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 2.7e-65 252.7 153 76.5
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 3.5e-65 252.3 156 75.6
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 3.5e-65 252.3 155 77.4
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 3.5e-65 252.3 157 75.2
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 4.6e-65 251.9 156 75.6
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 4.6e-65 251.9 160 74.4
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 6.0e-65 251.5 156 75.0
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 6.0e-65 251.5 174 71.8
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 6.0e-65 251.5 184 68.5
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 7.8e-65 251.1 154 77.9
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 7.8e-65 251.1 181 70.2
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 1.7e-64 250.0 173 71.1
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 3.0e-64 249.2 169 70.4
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 8.7e-64 247.7 146 82.9
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 7.3e-63 244.6 156 71.8
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 7.3e-63 244.6 168 70.8
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 1.3e-62 243.8 156 73.1
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 1.3e-62 243.8 167 69.5
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 1.6e-62 243.4 172 70.3
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 1.6e-62 243.4 156 73.1
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 2.1e-62 243.0 180 66.1
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.1e-62 243.0 158 72.2
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 3.6e-62 242.3 190 64.2
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 4.8e-62 241.9 158 72.2
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 1.4e-61 240.4 147 76.2
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 1.8e-61 240.0 158 75.3
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 9.0e-61 237.7 181 64.6
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 2.0e-60 236.5 152 73.0
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 4.4e-60 235.3 154 71.4
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 7.6e-60 234.6 169 69.2
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 7.6e-60 234.6 160 70.6
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 9.9e-60 234.2 214 57.9
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 1.7e-59 233.4 229 55.0
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 2.2e-59 233.0 161 72.0
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 2.9e-59 232.6 195 61.5
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 3.5e-57 225.7 205 56.6
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 4.3e-55 218.8 147 70.1
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 2.1e-54 216.5 195 56.9
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 1.8e-53 213.4 159 66.7
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 1.7e-51 206.8 151 65.6
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 3.2e-50 202.6 154 61.7
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 9.3e-50 201.1 183 61.7
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 1.0e-48 197.6 172 54.1
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 1.9e-47 193.4 135 70.4
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 3.7e-46 189.1 120 75.0
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 6.9e-45 184.9 141 61.0
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.0e-43 181.0 201 52.7
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 8.7e-40 167.9 142 60.6
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 1.5e-39 167.2 163 54.0
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 7.2e-34 148.3 84 78.6
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 3.3e-31 139.4 135 54.1
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 3.3e-31 139.4 135 54.1
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 1.0e-27 127.9 114 50.9
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.1e-26 124.4 84 73.8
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 2.3e-24 116.7 74 79.7
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 3.3e-23 112.8 129 45.0
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 3.7e-22 109.4 116 42.2
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 5.3e-21 105.5 114 50.9
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 6.9e-21 105.1 136 40.4
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 1.7e-14 84.0 40 92.5
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 3.1e-13 79.7 82 50.0
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 6.5e-11 72.0 84 53.6
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 8.5e-11 71.6 46 76.1
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 2.3e-08 63.5 101 40.6
arahy.Tifrunner.gnm1.ann1.QG9RQP Arachis hypogaea HOM05D030826 ORTHO05D023738 7.5e-07 58.5 42 66.7
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 6.3e-06 55.5 129 30.2
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 6.3e-06 55.5 129 30.2


User provided reference genes

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