Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.2e-98 363.2 183 100.0
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 6.1e-92 340.9 183 93.4
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.0e-91 340.1 183 91.3
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 6.3e-89 330.9 183 89.6
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 3.1e-88 328.6 183 89.1
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 88.0
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 84.2
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 3.6e-84 315.1 183 83.6
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 6.1e-84 314.3 183 83.6
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 6.1e-84 314.3 183 83.6
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 6.1e-84 314.3 183 84.2
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 8.0e-84 313.9 179 86.0
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 83.6
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 83.6
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 83.6
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 6.8e-83 310.8 182 83.0
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 83.1
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 84.2
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 82.0
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 82.5
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 84.2
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 82.0
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 82.0
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 83.6
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 82.0
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 82.0
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 81.4
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 82.0
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 84.2
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 81.4
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 7.5e-82 307.4 183 82.5
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 7.5e-82 307.4 183 82.0
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 9.8e-82 307.0 179 83.8
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 83.1
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 1.3e-81 306.6 179 82.7
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 2.2e-81 305.8 183 81.4
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 2.2e-81 305.8 183 82.0
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 2.2e-81 305.8 183 81.4
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.8e-81 305.4 183 80.9
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.8e-81 305.4 183 80.9
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 2.8e-81 305.4 183 82.0
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 4.9e-81 304.7 183 80.9
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 6.3e-81 304.3 183 80.9
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 6.3e-81 304.3 183 80.9
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 8.3e-81 303.9 183 81.4
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 1.1e-80 303.5 183 81.4
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 1.1e-80 303.5 183 81.4
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.1e-80 303.5 183 81.4
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.1e-80 303.5 183 81.4
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.4e-80 303.1 183 80.3
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 1.4e-80 303.1 183 80.9
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 1.8e-80 302.8 183 80.9
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 1.8e-80 302.8 183 80.9
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 2.4e-80 302.4 183 79.2
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 80.7
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 3.1e-80 302.0 183 80.9
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.1e-80 302.0 183 79.2
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.1e-80 302.0 183 79.2
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 4.1e-80 301.6 181 79.0
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 5.4e-80 301.2 183 79.2
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 7.0e-80 300.8 183 80.9
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 7.0e-80 300.8 190 78.4
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 9.2e-80 300.4 183 79.2
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 9.2e-80 300.4 183 78.7
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 9.2e-80 300.4 181 80.7
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.2e-79 300.1 183 78.7
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 1.2e-79 300.1 183 82.0
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 1.2e-79 300.1 181 79.0
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 1.2e-79 300.1 183 78.1
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 1.6e-79 299.7 181 79.6
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 1.6e-79 299.7 181 79.6
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 1.6e-79 299.7 181 79.6
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 2.0e-79 299.3 181 80.1
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 2.0e-79 299.3 183 80.9
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 79.0
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 79.6
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 79.6
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 3.5e-79 298.5 183 78.7
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.5e-79 298.5 183 78.7
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.5e-79 298.5 183 78.7
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 79.0
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 4.5e-79 298.1 181 78.5
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 4.5e-79 298.1 183 78.7
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 5.9e-79 297.7 181 79.0
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 7.8e-79 297.4 183 78.7
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 1.3e-78 296.6 181 77.9
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 1.3e-78 296.6 183 77.6
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 1.7e-78 296.2 181 77.9
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 1.7e-78 296.2 183 79.2
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 2.3e-78 295.8 181 77.3
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.9e-78 295.4 183 78.1
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 3.8e-78 295.0 183 79.2
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 5.0e-78 294.7 181 76.8
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 5.0e-78 294.7 181 78.5
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 6.6e-78 294.3 183 78.7
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 8.6e-78 293.9 183 78.1
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 8.6e-78 293.9 183 76.5
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 1.1e-77 293.5 181 76.8
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 1.5e-77 293.1 182 79.7
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 4.3e-77 291.6 181 79.0
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 9.5e-77 290.4 179 77.7
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 2.1e-76 289.3 181 77.3
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 3.6e-76 288.5 183 77.0
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 2.3e-75 285.8 182 78.0
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 3.0e-75 285.4 182 76.4
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.2e-74 283.5 182 75.8
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 5.8e-74 281.2 182 74.7
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 1.3e-73 280.0 182 76.9
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 3.7e-73 278.5 183 75.4
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 6.4e-73 277.7 183 75.4
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 5.4e-72 274.6 181 74.0
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 7.0e-72 274.2 183 70.5
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 1.6e-71 273.1 228 62.3
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 2.7e-71 272.3 183 73.2
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 3.5e-71 271.9 183 71.0
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 6.0e-71 271.2 185 72.4
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 1.9e-69 266.2 183 68.9
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 4.3e-69 265.0 219 64.4
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 1.1e-67 260.4 184 66.8
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 8.9e-67 257.3 155 80.6
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.2e-66 256.9 155 78.1
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.3e-65 253.4 152 80.9
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 2.2e-65 252.7 183 72.1
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 2.2e-65 252.7 183 66.1
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 4.1e-64 248.4 183 69.9
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 1.2e-63 246.9 152 79.6
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 5.0e-62 241.5 186 69.9
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 9.5e-61 237.3 179 67.6
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 6.2e-60 234.6 138 80.4
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 8.9e-59 230.7 179 66.5
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 2.1e-55 219.5 183 63.4
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 4.3e-53 211.8 138 73.2
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 3.6e-52 208.8 175 62.9
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.1e-51 207.2 183 60.7
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 1.4e-51 206.8 155 68.4
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 1.1e-48 197.2 158 60.8
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 5.4e-48 194.9 152 61.2
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.3e-46 190.3 179 57.5
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 1.5e-45 186.8 186 50.5
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 5.2e-43 178.3 132 65.2
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 5.2e-43 178.3 148 60.1
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 7.6e-42 174.5 158 56.3
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 2.9e-41 172.6 102 82.4
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 2.4e-40 169.5 106 74.5
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 2.4e-40 169.5 102 79.4
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 7.8e-39 164.5 100 77.0
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 4.3e-37 158.7 100 77.0
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 7.3e-37 157.9 99 75.8
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.1e-35 152.5 134 58.2
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 2.9e-33 146.0 99 67.7
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 7.1e-32 141.4 81 82.7
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 2.1e-31 139.8 105 63.8
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.1e-27 127.5 81 74.1
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 9.9e-26 120.9 101 59.4
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 3.8e-25 119.0 78 73.1
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 1.1e-24 117.5 106 57.5
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 5.8e-18 95.1 68 63.2
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 4.9e-17 92.0 102 52.0
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 6.0e-15 85.1 187 36.4
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.0e-14 84.3 52 78.8
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 1.9e-08 63.5 37 78.4
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 9.4e-08 61.2 181 30.9
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 1.6e-07 60.5 81 44.4


User provided reference genes

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