Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 4687.9 2410 100.0
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 2915.2 2572 62.6
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 2907.1 2628 61.6
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 2867.0 2592 61.6
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 2298.9 2605 50.4
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 2117.0 2565 48.0
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1925.2 2608 44.1
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1910.6 2618 43.7
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 1796.6 2613 43.1
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 1738.8 2606 41.9
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 1729.1 2628 41.2
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 1720.3 2604 40.9
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1687.9 2580 40.8
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1686.0 2636 40.2
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 1679.1 2618 41.1
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 1666.0 2607 40.5
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 1654.0 2589 41.0
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1652.1 2707 40.2
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 1644.8 2603 40.9
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1628.2 2636 40.3
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1624.4 2605 39.8
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1615.1 2600 39.9
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1602.4 2604 39.6
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 1592.8 2603 39.6
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1592.4 2613 39.2
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1582.0 2588 40.5
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1581.2 2596 39.3
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1574.3 2614 39.4
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1563.5 2598 39.1
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1540.0 2580 39.3
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1533.1 2579 38.7
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1531.9 2590 38.7
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1531.2 2550 38.4
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1526.9 2590 38.5
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1526.5 2593 38.4
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1524.6 2595 38.6
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1520.0 2237 41.9
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1511.1 2533 38.9
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1510.4 2579 38.0
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1502.6 2382 40.1
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1502.3 2579 38.5
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1489.6 2645 37.3
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1486.9 2521 38.8
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1484.5 2601 37.6
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1484.2 2616 38.3
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1473.8 2454 38.5
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1468.0 2655 36.8
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1462.2 2612 37.8
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1453.0 2632 37.1
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1441.4 2595 37.5
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1438.3 2420 38.8
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1431.0 2629 37.0
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1427.5 2599 37.0
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1426.8 2531 38.0
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1422.9 2608 37.6
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1418.7 2612 36.8
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1414.1 2589 37.8
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1412.9 2697 36.2
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1412.5 2491 38.3
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1409.4 2489 38.7
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1404.0 2498 38.1
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1403.3 2607 36.7
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1399.4 2662 36.4
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1399.4 2503 38.0
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1393.6 2605 36.6
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1382.9 2662 36.5
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1369.8 2599 36.8
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1328.9 2476 36.0
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1325.8 2622 35.5
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1294.3 2501 36.1
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1292.7 2447 36.5
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1291.2 2668 35.0
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1238.4 2625 35.2
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1223.4 2025 39.0
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1215.3 2658 35.0
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1209.1 2306 35.0
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1201.4 2629 34.3
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1197.6 2191 37.3
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1193.7 2147 37.7
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1189.5 2468 35.4
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1187.6 2662 34.0
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1176.4 2543 34.4
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1145.6 2632 32.8
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1133.6 1803 39.7
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1112.8 2537 33.9
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1100.1 2572 33.6
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 3.6e-309 1066.2 2556 33.1
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.5e-307 1060.8 2319 33.8
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 2.6e-291 1006.9 2001 34.2
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 1.8e-279 967.6 2207 33.8
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 1.6e-277 961.1 2029 33.5
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 7.1e-273 945.7 2083 33.7
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 9.3e-273 945.3 1747 36.3
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 1.5e-262 911.4 2364 31.8
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 1.1e-241 842.0 2180 31.8
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 8.8e-239 832.4 767 57.1
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 2.6e-238 830.9 1714 35.0
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.9e-233 814.7 1765 34.0
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.3e-199 701.4 914 45.6
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 4.6e-171 607.4 820 43.9
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 9.6e-169 599.7 584 56.3
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 3.1e-167 594.7 2429 26.1
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 5.5e-164 583.9 614 53.7
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 5.9e-150 537.3 1154 34.0
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 1.9e-148 532.3 2607 24.2
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 2.3e-146 525.4 2647 24.4
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 3.1e-143 515.0 2344 26.1
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 1.8e-138 499.2 617 48.5
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.1e-132 479.9 731 41.5
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 1.3e-128 466.5 2644 24.2
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.7e-125 456.1 757 40.0
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.2e-123 449.9 644 43.6
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.1e-116 426.8 1228 30.0
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.4e-105 388.3 895 32.2
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 9.2e-103 380.6 396 53.8
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 8.6e-101 374.0 922 33.0
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.5e-97 363.2 543 42.4
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 1.6e-94 353.2 532 40.0
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 3.9e-93 348.6 1062 27.9
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 4.3e-92 345.1 317 57.1
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 5.4e-87 328.2 717 35.6
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 1.7e-85 323.2 344 52.9
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 7.3e-84 317.8 856 31.9
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.5e-76 293.5 466 39.1
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.2e-75 290.4 467 40.9
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 5.3e-58 231.9 386 36.5
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 1.5e-49 203.8 177 62.7
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 4.9e-48 198.7 177 54.2
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 7.1e-47 194.9 173 60.1
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 6.3e-43 181.8 449 30.5
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 5.5e-39 168.7 345 32.5
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 2.2e-35 156.8 211 44.5
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 3.4e-33 149.4 168 47.6
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 5.5e-31 142.1 442 28.3
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 7.9e-30 138.3 140 52.1
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 3.3e-28 132.9 139 48.2
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 3.7e-27 129.4 339 34.2
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 3.0e-21 109.8 119 47.9
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.1e-20 107.8 345 28.4
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 5.7e-20 105.5 316 28.5
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 5.7e-20 105.5 238 34.5
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.2e-16 93.6 169 36.1
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.8e-16 92.8 127 40.9
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 3.2e-15 89.7 96 50.0
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 4.7e-14 85.9 79 48.1
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 4.0e-13 82.8 67 56.7
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 1.2e-12 81.3 105 46.7
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 2.8e-11 76.6 229 27.9
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 2.8e-11 76.6 94 44.7
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 2.8e-11 76.6 94 44.7
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 4.8e-11 75.9 96 39.6
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 8.2e-11 75.1 262 27.9
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 1.4e-10 74.3 204 31.9
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 1.6e-09 70.9 53 58.5
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 1.6e-09 70.9 152 34.2
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 5.9e-09 68.9 351 21.9
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 1.7e-08 67.4 251 23.9
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 5.0e-08 65.9 69 50.7
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 1.9e-07 63.9 158 34.2


User provided reference genes

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