Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 0.0e+00 1420.2 701 100.0
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 0.0e+00 1154.0 786 74.0
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 0.0e+00 1120.5 695 80.0
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 4.8e-312 1073.9 769 70.6
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 4.3e-311 1070.8 720 76.2
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 4.5e-292 1007.7 711 69.3
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 1.8e-288 995.7 717 68.5
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 9.0e-285 983.4 710 67.9
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 1.5e-284 982.6 707 68.3
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 7.6e-284 980.3 708 68.1
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 3.8e-283 978.0 711 67.7
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 6.4e-283 977.2 706 68.1
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 2.1e-281 972.2 707 67.9
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 1.3e-280 969.5 711 67.9
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 3.9e-280 968.0 710 67.3
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 1.1e-279 966.5 710 67.3
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 3.3e-279 964.9 710 67.2
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 5.6e-279 964.1 710 67.0
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 5.6e-279 964.1 709 67.8
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 9.6e-279 963.4 713 67.2
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 2.8e-278 961.8 703 68.0
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 6.2e-278 960.7 713 67.3
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 1.4e-277 959.5 711 67.2
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 1.2e-276 956.4 711 65.8
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 1.5e-276 956.1 703 67.1
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 7.6e-276 953.7 712 66.7
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 1.0e-275 953.4 701 67.9
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 1.7e-275 952.6 707 67.6
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 4.9e-275 951.0 714 66.1
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 1.1e-274 949.9 716 65.4
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 4.2e-274 948.0 710 66.6
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 7.1e-274 947.2 709 66.7
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 6.0e-273 944.1 708 66.2
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 7.9e-273 943.7 708 66.5
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 7.9e-273 943.7 700 67.7
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 1.8e-272 942.6 704 66.3
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 3.0e-272 941.8 701 66.9
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 3.0e-272 941.8 707 66.2
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 3.9e-272 941.4 708 66.5
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.5e-271 939.5 698 67.0
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 3.3e-271 938.3 711 66.1
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 3.3e-271 938.3 711 66.4
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 7.4e-271 937.2 711 66.2
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 7.4e-271 937.2 710 66.1
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 9.7e-271 936.8 702 65.4
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 2.2e-270 935.6 712 65.7
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 2.8e-270 935.3 711 66.1
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 2.8e-270 935.3 700 66.6
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 3.7e-270 934.9 702 66.7
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 3.7e-270 934.9 710 65.5
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 8.2e-270 933.7 707 64.6
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 1.4e-269 932.9 707 65.1
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 1.4e-269 932.9 725 64.3
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 6.9e-269 930.6 704 65.1
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 9.0e-269 930.2 698 66.6
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 9.0e-269 930.2 706 65.7
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 2.9e-267 925.2 710 64.6
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 2.5e-266 922.2 700 66.4
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 2.5e-266 922.2 713 65.2
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 4.2e-266 921.4 704 64.5
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 4.2e-266 921.4 708 65.1
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 9.4e-266 920.2 708 65.1
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 1.6e-265 919.5 712 64.3
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 2.7e-265 918.7 742 62.8
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 3.6e-265 918.3 700 66.3
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 3.6e-265 918.3 704 64.3
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 8.8e-264 913.7 700 65.9
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 9.7e-263 910.2 704 65.1
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 1.3e-262 909.8 709 64.5
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 1.7e-262 909.4 703 64.2
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 2.2e-262 909.1 701 65.6
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 2.8e-262 908.7 688 65.1
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 4.8e-262 907.9 706 65.0
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 4.1e-261 904.8 700 64.7
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 9.1e-261 903.7 698 64.9
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 1.5e-260 902.9 692 64.2
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 5.9e-260 901.0 706 64.4
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.2e-259 899.0 730 62.2
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 1.4e-258 896.3 698 63.9
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 7.2e-258 894.0 701 65.2
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 2.1e-257 892.5 702 63.2
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 2.3e-256 889.0 792 58.5
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 3.0e-256 888.6 699 63.8
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 5.1e-256 887.9 669 66.1
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 2.8e-254 882.1 704 63.4
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 3.7e-254 881.7 595 71.9
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 4.7e-249 864.8 691 61.5
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 8.0e-249 864.0 730 61.6
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 1.1e-245 853.6 710 60.6
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 5.3e-237 824.7 699 61.8
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 3.8e-235 818.5 556 70.5
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 4.8e-230 801.6 668 60.2
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 2.0e-228 796.2 588 66.7
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 2.3e-227 792.7 712 56.7
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 3.0e-224 782.3 724 56.8
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 6.8e-208 728.0 705 55.3
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 7.5e-207 724.5 542 65.7
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 1.9e-194 683.3 522 64.9
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 5.6e-194 681.8 701 50.8
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 2.8e-193 679.5 703 51.1
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 1.1e-176 624.4 690 48.6
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 2.6e-175 619.8 747 49.1
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 9.3e-173 611.3 884 41.2
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 3.5e-164 582.8 442 63.6
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 3.1e-160 569.7 807 41.4
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 5.0e-158 562.4 677 44.6
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 8.5e-150 535.0 492 55.3
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 7.4e-146 521.9 385 66.0
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 1.0e-134 485.0 746 41.2
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 2.1e-132 477.2 729 41.2
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 7.2e-125 452.2 735 38.6
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 1.7e-118 431.0 712 36.1
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 4.4e-114 416.4 812 35.1
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 7.7e-111 405.6 301 68.4
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 1.4e-99 368.2 356 54.8
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 2.4e-96 357.5 334 59.0
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 8.9e-75 285.8 259 56.4
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 2.7e-63 247.7 201 58.7
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 1.3e-52 212.2 132 76.5
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.4e-51 208.8 164 61.0
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 5.8e-50 203.4 191 58.6
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 1.9e-37 161.8 102 77.5
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 1.5e-34 152.1 180 51.7
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 1.4e-27 129.0 112 55.4
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 1.4e-24 119.0 99 65.7
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 1.0e-22 112.8 113 54.9
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 6.7e-22 110.2 97 52.6
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 3.1e-19 101.3 149 40.3
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 9.4e-16 89.7 61 62.3
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 2.0e-13 82.0 57 66.7
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 3.1e-11 74.7 68 55.9
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 5.5e-08 63.9 44 63.6
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 7.2e-08 63.5 61 54.1
SHI28556 Sapria himalayana HOM05D005873 ORTHO05D007582 1.6e-07 62.4 51 54.9
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 1.0e-06 59.7 74 40.5


User provided reference genes

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