Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 2.0e-161 572.4 291 100.0
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 3.0e-141 505.4 292 88.0
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 3.3e-140 501.9 292 86.3
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.2e-137 493.4 292 84.6
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.5e-137 493.0 291 86.3
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 6.4e-136 487.6 291 82.5
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 6.4e-136 487.6 292 83.6
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 1.1e-135 486.9 292 82.5
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 3.2e-135 485.3 292 82.9
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 4.2e-135 485.0 292 82.2
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 7.1e-135 484.2 293 83.3
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.2e-134 483.4 294 82.7
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 1.6e-134 483.0 292 82.2
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 2.1e-134 482.6 292 86.0
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 2.1e-134 482.6 291 81.4
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 2.1e-134 482.6 292 82.2
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 2.7e-134 482.3 292 87.0
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.7e-134 482.3 290 83.1
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.7e-134 482.3 292 81.8
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 3.5e-134 481.9 291 81.1
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 6.0e-134 481.1 290 83.1
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 1.0e-133 480.3 292 81.5
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.8e-133 479.6 292 82.5
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 2.3e-133 479.2 292 81.5
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 3.9e-133 478.4 292 82.5
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 5.1e-133 478.0 292 81.5
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 1.1e-132 476.9 291 81.1
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 1.5e-132 476.5 290 80.7
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.5e-132 476.5 292 80.8
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 2.5e-132 475.7 322 75.2
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.3e-132 475.3 292 81.8
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 5.6e-132 474.6 290 81.0
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 7.4e-132 474.2 293 81.6
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 9.6e-132 473.8 290 81.0
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 1.1e-130 470.3 291 80.4
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.8e-130 469.5 290 81.7
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 3.1e-130 468.8 292 79.8
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.2e-129 466.8 292 79.8
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 1.5e-129 466.5 306 77.5
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 2.0e-129 466.1 280 82.5
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 4.5e-129 464.9 292 79.8
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 7.6e-129 464.2 272 83.5
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 7.6e-129 464.2 293 80.5
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.7e-128 463.0 321 75.1
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 3.8e-128 461.8 294 78.2
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 6.4e-128 461.1 294 78.6
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 2.7e-126 455.7 293 78.2
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 2.7e-126 455.7 292 77.4
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 2.7e-126 455.7 291 79.4
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 2.7e-126 455.7 291 79.0
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.6e-126 454.9 290 77.6
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 7.9e-126 454.1 292 77.7
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 1.3e-125 453.4 292 77.7
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 2.3e-125 452.6 326 71.8
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 5.1e-125 451.4 292 78.4
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.1e-124 450.3 292 76.0
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.5e-124 449.9 291 75.9
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 1.9e-124 449.5 291 77.7
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 7.4e-124 447.6 291 77.3
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 6.2e-123 444.5 292 76.0
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.4e-122 443.4 291 73.9
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 1.8e-122 443.0 297 74.4
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 1.8e-122 443.0 268 81.3
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 4.0e-122 441.8 292 75.3
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 4.0e-122 441.8 291 75.9
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 4.0e-122 441.8 290 75.5
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 5.3e-122 441.4 291 74.6
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 9.0e-122 440.7 293 77.1
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 5.8e-121 438.0 292 75.0
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 1.0e-120 437.2 292 75.7
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 4.9e-120 434.9 292 73.3
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 5.5e-119 431.4 297 75.1
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.0e-117 427.2 294 74.1
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 1.3e-117 426.8 292 73.3
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 2.3e-117 426.0 294 74.1
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 2.3e-117 426.0 291 73.5
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 3.9e-117 425.2 291 70.8
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 6.7e-117 424.5 325 68.9
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 6.7e-117 424.5 290 74.1
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 8.7e-117 424.1 294 71.1
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 4.3e-116 421.8 292 74.7
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 5.7e-116 421.4 291 73.5
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 5.7e-116 421.4 291 73.5
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.3e-115 420.2 290 72.4
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 6.9e-114 414.5 290 71.4
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 1.2e-113 413.7 293 71.3
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.0e-113 412.9 290 71.4
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 1.3e-112 410.2 385 61.0
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 2.2e-112 409.5 290 72.4
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 5.0e-112 408.3 285 72.6
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.5e-111 406.0 310 67.4
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.5e-111 406.0 308 67.9
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 2.5e-111 406.0 298 70.5
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 9.4e-111 404.1 237 84.4
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 1.6e-110 403.3 291 70.8
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 1.6e-110 403.3 291 70.8
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 1.0e-109 400.6 292 68.2
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 2.3e-109 399.4 292 70.9
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 5.1e-109 398.3 292 71.6
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 6.7e-109 397.9 291 70.4
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 8.8e-109 397.5 293 70.3
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 5.7e-108 394.8 289 69.9
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 1.7e-107 393.3 290 70.3
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 2.2e-107 392.9 291 69.1
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 2.8e-107 392.5 291 69.1
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 2.8e-107 392.5 292 68.5
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 3.7e-107 392.1 293 68.6
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 6.3e-107 391.3 293 68.6
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.8e-106 389.8 292 69.2
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 2.4e-106 389.4 235 81.3
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 1.3e-104 383.6 291 67.7
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 9.4e-103 377.5 291 68.0
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.0e-101 374.0 297 65.7
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 9.7e-100 367.5 228 77.2
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.4e-98 362.8 290 66.6
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 5.9e-97 358.2 291 63.2
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.0e-96 355.1 297 64.6
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 9.4e-95 350.9 292 62.7
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 4.7e-94 348.6 292 64.0
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 1.8e-93 346.7 208 82.7
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.8e-93 346.7 191 87.4
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 2.2e-91 339.7 260 67.7
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 4.8e-91 338.6 238 71.8
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 6.3e-91 338.2 259 67.6
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 3.1e-90 335.9 292 63.0
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.6e-86 323.6 290 59.3
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 3.0e-85 319.3 285 58.6
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 6.8e-77 291.6 301 51.8
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 2.6e-76 289.7 187 74.3
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 6.3e-75 285.0 297 51.9
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.1e-74 284.3 191 70.2
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 1.9e-71 273.5 202 68.8
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 3.0e-69 266.2 293 51.2
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.4e-61 240.7 289 49.8
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.6e-54 217.2 262 51.1
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 3.1e-53 213.0 294 46.6
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 3.1e-53 213.0 294 46.6
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 3.1e-53 213.0 294 46.6
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 6.2e-46 188.7 105 88.6
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 2.9e-43 179.9 107 83.2
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 3.5e-41 172.9 227 46.7
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 5.6e-39 165.6 150 58.7
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 5.2e-37 159.1 154 56.5
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.5e-36 157.5 154 55.8
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.5e-36 157.5 154 55.8
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 5.4e-34 149.1 194 41.8
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 2.1e-33 147.1 84 86.9
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 3.9e-32 142.9 106 64.2
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 8.1e-30 135.2 109 62.4
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 9.9e-28 128.3 73 84.9
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 9.9e-28 128.3 73 84.9
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 4.9e-27 125.9 72 84.7
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 8.1e-22 108.6 93 62.4
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 3.1e-21 106.7 68 75.0
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 4.2e-18 96.3 187 38.0
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 9.3e-18 95.1 60 70.0
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 6.0e-17 92.4 128 40.6
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 5.6e-15 85.9 59 69.5
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.3e-14 84.7 231 31.2
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 6.2e-14 82.4 86 52.3
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 4.5e-12 76.3 58 69.0
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 5.1e-08 62.8 67 52.2
GSVIVG01012950001 Vitis vinifera HOM05D004410 ORTHO05D438744 3.3e-07 60.1 66 51.5


User provided reference genes

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