Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 1.9e-116 422.5 214 100.0
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 1.9e-68 263.1 214 65.9
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.6e-67 260.0 214 64.5
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 2.1e-67 259.6 214 65.0
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 5.0e-61 238.4 214 59.8
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 6.5e-61 238.0 214 61.2
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 1.6e-59 233.4 214 57.9
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 2.1e-59 233.0 214 57.0
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 8.0e-59 231.1 214 58.4
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 8.0e-59 231.1 214 58.4
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 2.3e-58 229.6 214 57.9
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 3.0e-58 229.2 214 58.9
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 3.0e-58 229.2 214 57.9
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 4.0e-58 228.8 213 56.8
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 5.2e-58 228.4 214 57.0
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.8e-58 228.0 214 57.5
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 6.8e-58 228.0 214 57.5
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 1.2e-57 227.3 214 57.5
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 1.2e-57 227.3 214 57.0
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 1.2e-57 227.3 214 57.5
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 1.5e-57 226.9 214 57.9
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.0e-57 226.5 214 57.0
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 2.6e-57 226.1 214 56.5
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 5.7e-57 224.9 214 56.1
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 5.7e-57 224.9 214 56.1
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 7.5e-57 224.6 214 55.6
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 4.8e-56 221.9 214 54.7
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 4.8e-56 221.9 214 56.5
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 6.3e-56 221.5 214 56.5
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 1.1e-55 220.7 214 55.1
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 4.1e-55 218.8 214 55.6
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 4.1e-55 218.8 214 56.1
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 5.4e-55 218.4 214 55.1
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 5.4e-55 218.4 214 54.2
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 9.1e-55 217.6 214 55.6
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 9.1e-55 217.6 214 53.7
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 9.1e-55 217.6 214 54.2
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 5.9e-54 214.9 214 55.6
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.0e-53 214.2 214 53.3
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 1.0e-53 214.2 214 54.2
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 1.0e-53 214.2 214 53.7
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.3e-53 213.8 214 53.3
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 2.9e-53 212.6 214 53.3
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 2.9e-53 212.6 214 53.3
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 2.9e-53 212.6 214 54.7
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 3.8e-53 212.2 233 50.6
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 8.5e-53 211.1 214 53.3
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 3.2e-52 209.1 215 54.9
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 3.2e-52 209.1 215 54.9
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 7.2e-52 208.0 214 51.4
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 1.6e-51 206.8 214 51.9
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 1.6e-51 206.8 214 52.3
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 8.0e-51 204.5 214 52.3
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 1.0e-50 204.1 212 52.4
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 3.0e-50 202.6 214 51.4
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 3.0e-50 202.6 214 50.5
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 4.0e-50 202.2 214 51.9
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 4.0e-50 202.2 214 51.9
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 4.0e-50 202.2 214 50.9
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 1.2e-49 200.7 214 52.3
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.6e-49 199.5 214 50.9
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.6e-49 199.5 214 50.9
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 9.8e-49 197.6 214 50.0
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 9.8e-49 197.6 214 50.9
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 1.3e-48 197.2 214 50.9
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.3e-48 197.2 214 50.5
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.7e-48 196.8 214 50.5
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.7e-48 196.8 214 51.4
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 2.2e-48 196.4 214 49.5
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 2.2e-48 196.4 204 52.9
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 2.8e-48 196.1 211 51.2
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.8e-48 196.1 214 50.5
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 3.7e-48 195.7 214 50.9
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 4.9e-48 195.3 214 50.5
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 4.9e-48 195.3 214 49.1
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 4.9e-48 195.3 214 51.9
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 6.3e-48 194.9 214 50.5
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 8.3e-48 194.5 213 50.2
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 8.3e-48 194.5 214 51.4
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 8.3e-48 194.5 214 50.9
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 8.3e-48 194.5 214 50.0
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.1e-47 194.1 209 53.1
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 4.1e-47 192.2 214 50.0
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 7.0e-47 191.4 214 48.6
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 9.2e-47 191.0 214 50.0
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.5e-46 189.1 209 52.6
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 4.5e-46 188.7 204 49.5
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 5.9e-46 188.3 215 49.3
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 1.0e-45 187.6 210 49.0
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 1.3e-45 187.2 211 49.8
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 2.3e-45 186.4 215 49.3
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 3.8e-45 185.7 214 49.1
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 5.0e-45 185.3 215 48.8
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 1.1e-44 184.1 211 48.8
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 1.5e-44 183.7 214 50.0
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 1.9e-44 183.3 212 48.1
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 7.3e-44 181.4 206 47.1
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 7.3e-44 181.4 203 49.3
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 2.8e-43 179.5 206 48.1
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 3.6e-43 179.1 215 47.9
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 1.0e-42 177.6 186 51.6
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 3.0e-42 176.0 215 46.5
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 3.0e-42 176.0 206 48.1
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 6.8e-42 174.9 209 46.9
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 6.8e-42 174.9 107 79.4
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 1.7e-40 170.2 205 48.8
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 2.9e-40 169.5 214 46.3
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 3.7e-40 169.1 215 45.1
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 1.4e-39 167.2 98 84.7
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 3.2e-39 166.0 211 45.0
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 4.1e-39 165.6 222 45.0
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 5.4e-39 165.2 247 40.9
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 9.2e-39 164.5 207 45.4
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 7.8e-38 161.4 102 76.5
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 7.8e-38 161.4 214 44.9
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 5.0e-37 158.7 211 41.7
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 8.6e-37 157.9 106 69.8
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 4.3e-36 155.6 121 64.5
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 5.6e-36 155.2 91 81.3
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 1.6e-35 153.7 106 65.1
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 1.6e-35 153.7 106 65.1
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 1.6e-35 153.7 212 42.5
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 2.1e-35 153.3 106 65.1
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 6.2e-35 151.8 106 65.1
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 8.0e-35 151.4 212 40.1
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 1.0e-34 151.0 107 63.6
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 1.4e-34 150.6 107 64.5
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 8.3e-32 141.4 111 64.0
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 1.3e-29 134.0 205 39.5
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 1.1e-28 131.0 203 36.9
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 4.6e-22 109.0 199 37.7
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 5.1e-21 105.5 105 54.3
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 6.6e-21 105.1 105 50.5
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 5.6e-20 102.1 142 42.3
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.3e-18 96.7 61 72.1
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.3e-18 96.7 61 72.1
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 7.6e-17 91.7 119 44.5
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 1.4e-15 87.4 50 78.0
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.4e-15 87.4 211 31.8
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 5.1e-13 79.0 148 36.5
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 1.4e-10 70.9 141 30.5
Hund09752 Selenicereus undatus HOM05D005446 ORTHO05D006597 8.9e-10 68.2 40 80.0
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.7e-08 63.9 50 62.0
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 8.4e-08 61.6 92 33.7


User provided reference genes

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