Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 2.5e-121 438.7 215 100.0
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 2.4e-63 246.1 187 67.4
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 5.0e-61 238.4 160 71.9
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 5.0e-53 211.8 165 61.8
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 1.4e-50 203.8 165 60.6
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 2.3e-50 203.0 178 60.7
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 5.2e-50 201.8 154 64.3
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 2.0e-49 199.9 163 58.9
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 3.4e-49 199.1 165 60.6
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 9.8e-49 197.6 162 59.9
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 9.8e-49 197.6 162 59.9
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 1.3e-48 197.2 160 59.4
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 1.7e-48 196.8 179 59.2
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 2.2e-48 196.4 148 64.9
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 3.2e-47 192.6 160 56.2
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 3.2e-47 192.6 158 58.9
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 4.1e-47 192.2 158 60.8
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 5.4e-47 191.8 159 59.1
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 5.4e-47 191.8 197 49.7
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 7.0e-47 191.4 166 56.0
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 7.0e-47 191.4 162 54.3
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 1.2e-46 190.7 162 58.6
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 1.6e-46 190.3 161 58.4
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 1.6e-46 190.3 171 58.5
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 2.7e-46 189.5 160 58.1
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 4.6e-46 188.7 164 54.3
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 6.0e-46 188.3 169 55.0
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 1.3e-45 187.2 162 56.2
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 1.7e-45 186.8 158 58.9
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 2.3e-45 186.4 162 56.8
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 3.9e-45 185.7 162 56.2
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 5.0e-45 185.3 166 54.2
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 8.6e-45 184.5 168 56.0
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 1.5e-44 183.7 161 59.0
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 1.9e-44 183.3 161 54.7
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 1.9e-44 183.3 163 54.0
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 1.9e-44 183.3 160 57.5
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 3.3e-44 182.6 165 53.9
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 4.3e-44 182.2 155 58.1
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 5.6e-44 181.8 158 57.6
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 5.6e-44 181.8 161 55.3
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 7.3e-44 181.4 162 58.0
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 7.3e-44 181.4 158 56.3
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 9.5e-44 181.0 163 56.4
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 9.5e-44 181.0 162 53.7
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 1.2e-43 180.6 163 55.8
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 1.6e-43 180.3 158 55.1
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 1.6e-43 180.3 157 58.0
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 2.1e-43 179.9 161 57.8
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 4.7e-43 178.7 162 54.3
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 8.1e-43 177.9 163 56.4
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 1.1e-42 177.6 158 57.0
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 1.4e-42 177.2 162 54.3
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 1.8e-42 176.8 163 55.2
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 2.3e-42 176.4 163 55.8
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 2.3e-42 176.4 159 57.2
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 2.6e-41 172.9 160 51.2
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 5.8e-41 171.8 154 55.2
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 9.8e-41 171.0 161 54.0
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 2.2e-40 169.9 162 53.1
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 2.9e-40 169.5 154 53.2
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.7e-40 169.1 155 53.5
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 4.9e-40 168.7 172 50.6
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 4.9e-40 168.7 158 53.8
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 6.4e-40 168.3 151 55.6
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 8.3e-40 167.9 162 51.9
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 1.9e-39 166.8 171 51.5
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.9e-39 166.8 152 53.3
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 4.1e-39 165.6 161 52.8
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 5.4e-39 165.2 162 51.9
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 2.3e-37 159.8 157 51.0
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.1e-37 158.7 160 50.6
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 1.5e-36 157.1 163 49.1
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 3.3e-36 156.0 166 51.2
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 7.3e-36 154.8 164 50.0
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 3.6e-35 152.5 160 48.8
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 3.6e-35 152.5 149 50.3
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 6.2e-35 151.8 128 54.7
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 8.1e-35 151.4 157 48.4
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 8.1e-35 151.4 154 51.9
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 1.1e-34 151.0 163 49.1
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 2.3e-34 149.8 153 53.6
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 8.9e-34 147.9 164 48.8
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 3.4e-33 146.0 157 48.4
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 7.6e-33 144.8 160 46.9
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 1.7e-32 143.7 152 48.0
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 1.4e-31 140.6 152 50.0
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 1.9e-31 140.2 157 45.9
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 1.9e-31 140.2 163 46.6
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 7.1e-31 138.3 158 47.5
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 9.2e-31 137.9 157 46.5
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 2.1e-30 136.7 161 44.7
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 2.7e-30 136.3 128 53.9
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 3.5e-30 136.0 155 44.5
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 3.5e-30 136.0 155 44.5
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 3.5e-30 136.0 162 45.1
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 1.0e-29 134.4 155 45.2
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 1.0e-29 134.4 155 45.2
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 1.1e-28 131.0 125 52.0
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 1.5e-28 130.6 163 41.1
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 1.5e-28 130.6 155 43.2
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 2.5e-28 129.8 154 44.8
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 2.1e-27 126.7 157 40.1
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 2.8e-27 126.3 160 42.5
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 4.7e-27 125.6 158 46.8
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 6.2e-27 125.2 171 46.2
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 5.8e-25 118.6 159 39.6
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 1.3e-24 117.5 166 36.7
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 6.4e-24 115.2 158 42.4
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 1.0e-21 107.8 158 38.0
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 4.9e-16 89.0 134 38.1
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 2.5e-12 76.6 62 53.2
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 1.8e-10 70.5 115 31.3
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 4.0e-10 69.3 98 39.8
Sc05g0001360 Simmondsia chinensis HOM05D007082 ORTHO05D008895 9.0e-10 68.2 139 35.3
PRCOL_00001098 Prasinoderma coloniale HOM05D007082 ORTHO05D008895 4.2e-07 59.3 171 29.8
Sp3g01980 Schrenkiella parvula HOM05D002728 ORTHO05D002874 9.3e-07 58.2 136 27.9
BcaB04g21396 Brassica carinata HOM05D002728 ORTHO05D002874 1.6e-06 57.4 147 29.9
Thhalv10021296m.g Eutrema salsugineum HOM05D002728 ORTHO05D002874 2.1e-06 57.0 136 27.9
CARHR076950 Cardamine hirsuta HOM05D002728 ORTHO05D002874 3.5e-06 56.2 142 25.4
PGSC0003DMG400045025 Solanum tuberosum HOM05D007082 ORTHO05D008895 3.5e-06 56.2 114 33.3
BcaNung03547 Brassica carinata HOM05D002728 ORTHO05D002874 6.0e-06 55.5 147 28.6
BNapus_Darmor_BZH_scaffold_129p00170 Brassica napus HOM05D002728 ORTHO05D002874 6.0e-06 55.5 147 28.6
BolC1t05863H Brassica oleracea HOM05D002728 ORTHO05D002874 6.0e-06 55.5 147 28.6
BraA01t04606Z Brassica rapa HOM05D002728 ORTHO05D002874 6.0e-06 55.5 147 28.6


User provided reference genes

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