Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 7.0e-66 253.8 130 100.0
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 8.8e-61 236.9 130 91.5
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 1.7e-56 222.6 167 73.1
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 8.0e-54 213.8 130 85.4
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 1.8e-53 212.6 125 88.8
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 2.0e-52 209.1 130 84.6
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 4.4e-52 208.0 130 81.5
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 5.7e-52 207.6 130 82.3
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 7.5e-52 207.2 131 84.0
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 9.8e-52 206.8 130 81.5
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 9.8e-52 206.8 130 81.5
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 2.8e-51 205.3 130 80.8
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 2.8e-51 205.3 130 80.8
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 3.7e-51 204.9 130 82.3
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 3.7e-51 204.9 130 80.8
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 4.9e-51 204.5 130 81.5
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 8.3e-51 203.8 130 81.5
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 8.3e-51 203.8 130 81.5
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 1.1e-50 203.4 129 81.4
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 1.1e-50 203.4 132 81.8
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 1.1e-50 203.4 130 80.0
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.4e-50 203.0 130 80.0
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 1.4e-50 203.0 130 80.8
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.4e-50 203.0 127 81.1
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 1.4e-50 203.0 127 81.1
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 1.4e-50 203.0 127 81.1
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 3.1e-50 201.8 130 78.5
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 3.1e-50 201.8 130 79.2
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 4.1e-50 201.4 126 81.0
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 5.4e-50 201.1 130 78.5
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 5.4e-50 201.1 130 80.0
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 5.4e-50 201.1 130 82.3
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.2e-49 199.9 130 76.9
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.6e-49 199.5 130 79.2
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 2.0e-49 199.1 122 83.6
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 3.5e-49 198.4 130 77.7
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 4.5e-49 198.0 130 76.9
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 4.5e-49 198.0 130 80.0
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 5.9e-49 197.6 130 79.2
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 7.8e-49 197.2 127 79.5
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 7.8e-49 197.2 148 72.3
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 1.0e-48 196.8 137 77.4
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 2.3e-48 195.7 130 78.5
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 3.9e-48 194.9 171 64.9
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 6.6e-48 194.1 130 78.5
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 6.6e-48 194.1 125 79.2
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 6.6e-48 194.1 131 77.9
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 6.6e-48 194.1 132 81.1
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.1e-47 193.4 134 77.6
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 1.1e-47 193.4 122 79.5
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 1.1e-47 193.4 125 78.4
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 1.1e-47 193.4 130 75.4
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 1.5e-47 193.0 130 74.6
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 2.5e-47 192.2 128 75.8
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 2.5e-47 192.2 131 77.1
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 3.3e-47 191.8 127 77.2
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 4.3e-47 191.4 122 78.7
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 5.6e-47 191.0 130 78.5
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.2e-46 189.9 128 75.8
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 1.2e-46 189.9 130 76.2
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 1.2e-46 189.9 141 73.8
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 1.6e-46 189.5 122 78.7
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 1.6e-46 189.5 125 76.8
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 2.1e-46 189.1 128 74.2
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 2.1e-46 189.1 128 75.8
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 2.1e-46 189.1 128 75.8
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 3.6e-46 188.3 125 76.8
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 3.6e-46 188.3 130 77.7
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 4.7e-46 188.0 128 75.0
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 4.7e-46 188.0 125 76.8
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 6.1e-46 187.6 128 74.2
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 6.1e-46 187.6 125 76.0
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 3.1e-45 185.3 126 75.4
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 6.8e-45 184.1 130 70.8
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 6.8e-45 184.1 125 73.6
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 8.9e-45 183.7 130 70.0
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 1.2e-44 183.3 122 75.4
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 1.2e-44 183.3 106 84.9
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 1.5e-44 183.0 124 75.0
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.6e-44 182.2 124 74.2
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 4.4e-44 181.4 128 71.9
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 5.8e-44 181.0 128 73.4
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 7.5e-44 180.6 124 75.0
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 7.5e-44 180.6 124 75.0
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 9.8e-44 180.3 125 72.8
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 1.3e-43 179.9 122 75.4
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 1.3e-43 179.9 104 84.6
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 1.7e-43 179.5 130 70.0
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.7e-43 179.5 128 70.3
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 2.2e-43 179.1 125 72.8
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 2.2e-43 179.1 125 71.2
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 2.9e-43 178.7 121 74.4
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 2.9e-43 178.7 124 73.4
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 4.9e-43 177.9 120 75.8
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 6.4e-43 177.6 123 73.2
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 3.2e-42 175.3 123 72.4
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 3.2e-42 175.3 130 74.6
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 4.1e-42 174.9 125 72.0
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 9.2e-42 173.7 130 67.7
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 1.6e-41 172.9 120 70.8
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 2.0e-41 172.6 128 68.8
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 2.0e-41 172.6 132 68.9
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 2.7e-41 172.2 125 68.0
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 2.7e-41 172.2 125 68.0
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 2.7e-41 172.2 125 68.0
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.7e-41 172.2 100 83.0
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 3.5e-41 171.8 105 76.2
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 3.5e-41 171.8 105 76.2
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 3.5e-41 171.8 105 76.2
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 6.0e-41 171.0 116 69.8
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 1.0e-40 170.2 119 73.1
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 2.3e-40 169.1 128 66.4
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 1.1e-39 166.8 125 68.0
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 1.5e-39 166.4 128 66.4
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 2.5e-39 165.6 125 70.4
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 2.5e-39 165.6 103 78.6
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 3.3e-39 165.2 100 77.0
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 4.3e-39 164.9 122 68.0
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 5.6e-39 164.5 124 69.4
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 7.3e-39 164.1 160 61.2
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 1.2e-38 163.3 130 73.1
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 1.2e-38 163.3 95 82.1
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 2.3e-37 159.1 162 57.4
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 6.8e-37 157.5 126 64.3
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 8.9e-37 157.1 114 68.4
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 8.9e-37 157.1 92 82.6
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 7.5e-36 154.1 105 75.2
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 9.8e-36 153.7 135 62.2
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.7e-35 152.9 126 61.9
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 3.7e-35 151.8 104 67.3
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 4.9e-35 151.4 129 60.5
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 2.4e-34 149.1 125 59.2
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 1.6e-33 146.4 97 77.3
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 1.6e-33 146.4 87 80.5
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 3.5e-33 145.2 82 89.0
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 8.6e-32 140.6 101 65.3
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 3.3e-31 138.7 106 63.2
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 7.3e-31 137.5 94 77.7
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 9.5e-31 137.1 83 85.5
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.6e-30 136.3 88 75.0
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 3.6e-30 135.2 128 59.4
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 8.1e-30 134.0 84 78.6
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.8e-29 132.9 128 59.4
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 4.4e-28 128.3 78 80.8
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 2.7e-25 119.0 76 75.0
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 3.9e-24 115.2 95 63.2
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 6.6e-24 114.4 63 82.5
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 1.1e-23 113.6 93 60.2
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 1.1e-23 113.6 105 51.4
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 1.9e-23 112.8 69 78.3
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 3.3e-23 112.1 61 90.2
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 1.7e-19 99.8 95 56.8
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 1.1e-18 97.1 101 44.6
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 9.2e-18 94.0 125 47.2
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 3.5e-17 92.0 89 49.4
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 3.6e-14 82.0 114 40.4
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 3.2e-10 68.9 93 36.6
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 2.7e-09 65.9 38 84.2
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 7.8e-09 64.3 51 62.7
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 9.6e-07 57.4 48 62.5
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 1.3e-06 57.0 107 30.8


User provided reference genes

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