Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g047540 Amaranthus hybridus HOM05D006809 ORTHO05D008609 9.3e-181 636.7 315 100.0
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.4e-88 330.5 394 50.8
AUR62032115 Chenopodium quinoa HOM05D006809 ORTHO05D008609 1.3e-81 307.4 373 49.9
Hund09945 Selenicereus undatus HOM05D006809 ORTHO05D008609 1.1e-75 287.7 358 48.6
Sc12g0007330 Simmondsia chinensis HOM05D006809 ORTHO05D008609 8.4e-73 278.1 406 43.6
Cfa019358 Carpinus fangiana HOM05D006809 ORTHO05D008609 4.6e-71 272.3 406 41.4
Hma1.2p1_0060F.1_g032880 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 4.6e-71 272.3 405 41.7
QL10p020149 Quercus lobata HOM05D006809 ORTHO05D008609 1.7e-70 270.4 407 41.3
EL10Ac5g11165 Beta vulgaris HOM05D006809 ORTHO05D008609 1.9e-69 266.9 436 41.5
Oeu014424.1 Olea europaea HOM05D006809 ORTHO05D008609 1.3e-68 264.2 405 40.2
Thecc.03G104800 Theobroma cacao HOM05D006809 ORTHO05D008609 4.8e-68 262.3 404 39.9
Nn4g23476 Nelumbo nucifera HOM05D006809 ORTHO05D008609 8.1e-68 261.5 406 40.1
Manes.14G087700 Manihot esculenta HOM05D006809 ORTHO05D008609 1.4e-67 260.8 406 40.4
Gohir.D07G071900 Gossypium hirsutum HOM05D006809 ORTHO05D008609 1.8e-67 260.4 404 39.9
Gorai.001G076000 Gossypium raimondii HOM05D006809 ORTHO05D008609 1.8e-67 260.4 404 39.9
CSS0020904 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 2.4e-67 260.0 409 38.9
CiPaw.12G009200 Carya illinoinensis HOM05D006809 ORTHO05D008609 5.3e-67 258.8 406 40.1
Gohir.A07G067300 Gossypium hirsutum HOM05D006809 ORTHO05D008609 5.3e-67 258.8 404 39.9
Cc11_g04700 Coffea canephora HOM05D006809 ORTHO05D008609 6.9e-67 258.5 418 40.2
Actinidia04809 Actinidia chinensis HOM05D006809 ORTHO05D008609 9.0e-67 258.1 406 38.4
CSS0043969 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 1.2e-66 257.7 407 38.8
COL.COLO4_24315 Corchorus olitorius HOM05D006809 ORTHO05D008609 1.2e-66 257.7 404 39.4
Duzib205G0618 Durio zibethinus HOM05D006809 ORTHO05D008609 1.2e-66 257.7 404 39.4
TAR629G2676 Trochodendron aralioides HOM05D006809 ORTHO05D008609 1.5e-66 257.3 406 39.9
PSO017G0895 Papaver somniferum HOM05D006809 ORTHO05D008609 2.0e-66 256.9 408 40.2
Cpa.g.sc94.80 Carica papaya HOM05D006809 ORTHO05D008609 2.6e-66 256.5 399 39.8
MD06G1203600 Malus domestica HOM05D006809 ORTHO05D008609 3.4e-66 256.1 404 40.8
PSO478G2035 Papaver somniferum HOM05D006809 ORTHO05D008609 1.7e-65 253.8 408 40.0
AUR62039658 Chenopodium quinoa HOM05D006809 ORTHO05D008609 2.2e-65 253.4 364 45.3
MSTRG.11330 Avicennia marina HOM05D006809 ORTHO05D008609 2.9e-65 253.1 404 38.6
Dinv22761 Davidia involucrata HOM05D006809 ORTHO05D008609 3.8e-65 252.7 403 39.2
CANSAT11G1370 Cannabis sativa HOM05D006809 ORTHO05D008609 4.9e-65 252.3 408 40.0
FAN08G0740 Fragaria x ananassa HOM05D006809 ORTHO05D008609 6.4e-65 251.9 426 40.1
HanXRQChr05g0154271 Helianthus annuus HOM05D006809 ORTHO05D008609 6.4e-65 251.9 406 38.2
Nitab4.5_0001797g0090 Nicotiana tabacum HOM05D006809 ORTHO05D008609 8.4e-65 251.5 397 40.1
DCAR_010163 Daucus carota HOM05D006809 ORTHO05D008609 1.4e-64 250.8 405 39.5
Eucgr.K02539 Eucalyptus grandis HOM05D006809 ORTHO05D008609 1.4e-64 250.8 401 40.4
Sed0027469 Sechium edule HOM05D006809 ORTHO05D008609 1.9e-64 250.4 405 39.5
TWI81G0697 Tripterygium wilfordii HOM05D006809 ORTHO05D008609 1.9e-64 250.4 410 38.5
CsaV3_1G006160 Cucumis sativus L. HOM05D006809 ORTHO05D008609 3.2e-64 249.6 406 39.2
RcHm_v2.0_Chr7g0183371 Rosa chinensis HOM05D006809 ORTHO05D008609 3.2e-64 249.6 405 39.3
FAN13G1268 Fragaria x ananassa HOM05D006809 ORTHO05D008609 5.4e-64 248.8 405 40.0
Ciclev10023968m.g Citrus clementina HOM05D006809 ORTHO05D008609 9.3e-64 248.1 426 38.0
Medtr2g060520 Medicago truncatula HOM05D006809 ORTHO05D008609 2.1e-63 246.9 401 38.7
Haze_07749 Corylus avellana HOM05D006809 ORTHO05D008609 2.7e-63 246.5 406 39.2
MELO3C002045.2 Cucumis melo HOM05D006809 ORTHO05D008609 2.7e-63 246.5 402 38.6
PGR044G2265 Punica granatum HOM05D006809 ORTHO05D008609 6.0e-63 245.4 397 39.3
Sopen12g018840 Solanum pennellii HOM05D006809 ORTHO05D008609 6.0e-63 245.4 403 38.2
FAN18G0725 Fragaria x ananassa HOM05D006809 ORTHO05D008609 1.0e-62 244.6 403 39.5
GSVIVG01008127001 Vitis vinifera HOM05D006809 ORTHO05D008609 1.0e-62 244.6 409 39.4
ClCG04G011640 Citrullus lanatus HOM05D006809 ORTHO05D000432 3.3e-61 239.6 422 37.9
Lalb_Chr07g0189231 Lupinus albus HOM05D006809 ORTHO05D008609 6.2e-60 235.3 403 37.7
SGA_v2.0_scaffold313G48281 Striga asiatica HOM05D006809 ORTHO05D008609 8.1e-60 235.0 416 38.7
Ca_02916_v3 Cicer arietinum L. HOM05D006809 ORTHO05D008609 5.3e-59 232.3 401 37.7
Glyma.06G205000 Glycine max HOM05D006809 ORTHO05D008609 5.3e-59 232.3 395 38.2
Aa31LG11G2360 Aethionema arabicum HOM05D006809 ORTHO05D008609 6.9e-59 231.9 401 38.7
ECA246G1387 Erigeron canadensis HOM05D006809 ORTHO05D008609 6.9e-59 231.9 409 37.4
AagrBONN_evm.TU.Sc2ySwM_117.1929 Anthoceros agrestis HOM05D006809 ORTHO05D008609 2.4e-56 223.4 411 36.7
Aqoxy3G03648 Aquilegia oxysepala HOM05D006809 ORTHO05D008609 4.2e-56 222.6 406 36.9
Lsat_1_v5_gn_5_23620 Lactuca sativa HOM05D006809 ORTHO05D008609 5.5e-56 222.2 410 35.4
CARHR274620 Cardamine hirsuta HOM05D006809 ORTHO05D008609 4.6e-55 219.2 400 37.0
VMungo1309G1606 Vigna mungo HOM05D006809 ORTHO05D008609 4.6e-55 219.2 385 37.1
Carub.0008s2163 Capsella rubella HOM05D006809 ORTHO05D008609 6.0e-55 218.8 400 36.5
Lj5A134T75 Lonicera japonica HOM05D006809 ORTHO05D008609 1.0e-54 218.0 388 37.9
Lj1g0027663 Lotus japonicus HOM05D006809 ORTHO05D008609 1.8e-54 217.2 405 37.5
Os03g0754900 Oryza sativa ssp. japonica HOM05D006809 ORTHO05D008609 3.0e-54 216.5 405 37.0
vmacro16181 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 3.9e-54 216.1 526 30.8
Zm00001eb057630 Zea mays HOM05D006809 ORTHO05D008609 5.1e-54 215.7 400 38.0
arahy.Tifrunner.gnm1.ann1.23QZVI Arachis hypogaea HOM05D006809 ORTHO05D008609 6.7e-54 215.3 407 35.9
Rhsim08G0143500 Rhododendron simsii HOM05D006809 ORTHO05D008609 1.1e-53 214.5 565 29.7
AT5G60940 Arabidopsis thaliana HOM05D006809 ORTHO05D008609 1.5e-53 214.2 403 36.2
Thhalv10004278m.g Eutrema salsugineum HOM05D006809 ORTHO05D008609 1.5e-53 214.2 397 35.8
Nitab4.5_0001723g0010 Nicotiana tabacum HOM05D006809 ORTHO05D008609 1.9e-53 213.8 428 34.8
Mapoly0118s0024 Marchantia polymorpha HOM05D006809 ORTHO05D008609 7.4e-53 211.8 408 35.3
A03p46650 Brassica napus HOM05D006809 ORTHO05D008609 9.6e-53 211.5 396 37.1
Pp3c18_4200 Physcomitrium patens HOM05D006809 ORTHO05D008609 1.6e-52 210.7 405 36.0
Sp2g24250 Schrenkiella parvula HOM05D006809 ORTHO05D008609 1.6e-52 210.7 397 36.0
CDE10G1159 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 2.1e-52 210.3 259 48.6
BcaC06g33207 Brassica carinata HOM05D006809 ORTHO05D008609 3.7e-52 209.5 402 35.8
BolC7t44995H Brassica oleracea HOM05D006809 ORTHO05D008609 1.8e-51 207.2 404 35.6
BcaNung06908 Brassica carinata HOM05D006809 ORTHO05D008609 2.4e-51 206.8 398 35.4
C07p44720 Brassica napus HOM05D006809 ORTHO05D008609 2.4e-51 206.8 404 35.4
BraA03t13789Z Brassica rapa HOM05D006809 ORTHO05D008609 3.1e-51 206.5 396 36.6
ATR0827G115 Amborella trichopoda HOM05D006809 ORTHO05D008609 9.0e-51 204.9 466 33.7
FvH4_5g13570 Fragaria vesca HOM05D006809 ORTHO05D008609 2.0e-50 203.8 323 38.7
SMO358G0618 Selaginella moellendorffii HOM05D006809 ORTHO05D008609 7.6e-50 201.8 398 35.9
Phvul.009G203000 Phaseolus vulgaris HOM05D006809 ORTHO05D008609 3.8e-49 199.5 341 39.6
AL8G37560 Arabidopsis lyrata HOM05D006809 ORTHO05D008609 1.2e-47 194.5 400 34.0
SalBow5G3990 Salvia bowleyana HOM05D006809 ORTHO05D008609 3.3e-45 186.4 406 35.0
Prupe.5G207700 Prunus persica HOM05D006809 ORTHO05D008609 1.6e-44 184.1 376 33.2
Thecc.K0005900 Theobroma cacao HOM05D006809 ORTHO05D008609 6.3e-44 182.2 198 49.0
Hma1.2p1_0060F.1_g032870 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 4.5e-42 176.0 343 36.2
Atru.chr9.503 Acer truncatum HOM05D006809 ORTHO05D008609 1.7e-41 174.1 411 31.1
TPR.G23013 Trifolium pratense HOM05D007385 ORTHO05D009349 1.6e-31 141.0 283 33.6
vmacro17627 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 3.0e-30 136.7 300 33.3
Solyc12g038527.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 5.5e-24 115.9 134 44.8
Peaxi162Scf01223g00014 Petunia axillaris HOM05D006809 ORTHO05D008609 1.4e-22 111.3 200 36.5
Medtr6g088180 Medicago truncatula HOM05D006809 ORTHO05D008609 1.4e-19 101.3 145 44.1
Psat6g135880 Pisum sativum HOM05D006809 ORTHO05D008609 2.4e-19 100.5 94 52.1
vmacro17626 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 2.2e-17 94.0 170 32.9
Psat1g128360 Pisum sativum HOM05D006809 ORTHO05D008609 9.4e-16 88.6 103 46.6
SEGI_17180 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 2.7e-15 87.0 77 61.0
Glyma.04G160301 Glycine max HOM05D006809 ORTHO05D008609 9.7e-13 78.6 48 60.4
Medtr2g060475 Medicago truncatula HOM05D006809 ORTHO05D008609 2.8e-12 77.0 48 60.4
Solyc12g038550.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 1.8e-11 74.3 47 63.8
PGSC0003DMG400023259 Solanum tuberosum HOM05D006809 ORTHO05D008609 9.1e-11 72.0 47 61.7
CAN.G131.10 Capsicum annuum HOM05D006809 ORTHO05D008609 4.5e-10 69.7 84 52.4
CBR_g41384 Chara braunii HOM05D006809 ORTHO05D000002 1.3e-09 68.2 188 25.5
Haze_26316 Corylus avellana HOM05D006809 ORTHO05D008609 8.5e-09 65.5 163 27.6
CDE10G1173 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 1.9e-08 64.3 45 53.3
Solyc12g038523.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 3.2e-08 63.5 71 50.7
MD14G1214700 Malus domestica HOM05D006809 ORTHO05D008609 1.6e-07 61.2 97 45.4
MD14G1214500 Malus domestica HOM05D006809 ORTHO05D008609 8.0e-07 58.9 136 32.4
arahy.Tifrunner.gnm1.ann1.BJ4A4M Arachis hypogaea HOM05D006809 ORTHO05D008609 1.0e-06 58.5 68 54.4


User provided reference genes

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