Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g046350 Amaranthus hybridus HOM05D006217 ORTHO05D008480 1.3e-182 644.0 723 100.0
Sc12g0005700 Simmondsia chinensis HOM05D006217 ORTHO05D008480 6.7e-126 455.7 716 88.3
Hund02699 Selenicereus undatus HOM05D006217 ORTHO05D008480 2.9e-121 440.3 720 87.5
AUR62008306 Chenopodium quinoa HOM05D006217 ORTHO05D008480 2.1e-119 434.1 720 87.6
CSS0020542 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 3.6e-119 433.3 694 87.9
AUR62021789 Chenopodium quinoa HOM05D006217 ORTHO05D008480 2.0e-117 427.6 720 87.2
CSS0026115 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 1.1e-115 421.8 696 87.2
CSS0050348 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 1.1e-115 421.8 708 85.9
Nn4g22966 Nelumbo nucifera HOM05D006217 ORTHO05D008480 1.8e-115 421.0 666 89.0
FvH4_5g16180 Fragaria vesca HOM05D006217 ORTHO05D008480 2.4e-115 420.6 697 87.8
MD06G1183200 Malus domestica HOM05D006217 ORTHO05D008480 7.0e-115 419.1 670 90.4
Prupe.5G181900 Prunus persica HOM05D006217 ORTHO05D008480 3.5e-114 416.8 670 90.1
RcHm_v2.0_Chr7g0179951 Rosa chinensis HOM05D006217 ORTHO05D008480 5.0e-113 412.9 697 87.4
Eucgr.K02896 Eucalyptus grandis HOM05D006217 ORTHO05D008480 7.2e-112 409.1 667 89.8
EL10Ac5g10869 Beta vulgaris HOM05D006217 ORTHO05D008480 1.2e-111 408.3 718 86.6
Psat4g055880 Pisum sativum HOM05D006217 ORTHO05D008480 1.6e-111 407.9 709 84.6
Aqoxy3G03170 Aquilegia oxysepala HOM05D006217 ORTHO05D008480 1.2e-109 401.7 670 87.6
DCAR_016511 Daucus carota HOM05D006217 ORTHO05D008480 4.4e-109 399.8 680 86.9
MELO3C002229.2 Cucumis melo HOM05D006217 ORTHO05D008480 1.3e-108 398.3 714 84.5
Lj9C455T7 Lonicera japonica HOM05D006217 ORTHO05D008480 9.1e-107 392.1 792 77.1
Atru.BG.200.p Acer truncatum HOM05D006217 ORTHO05D008480 2.6e-101 374.0 653 81.9
MD14G1189200 Malus domestica HOM05D006217 ORTHO05D008480 7.5e-101 372.5 669 88.0
Manes.06G099200 Manihot esculenta HOM05D006217 ORTHO05D008480 1.3e-100 371.7 715 83.5
Hma1.2p1_0572F.1_g181090 Hydrangea macrophylla HOM05D006217 ORTHO05D008480 2.4e-99 367.5 689 84.8
Ca_21873_v3 Cicer arietinum L. HOM05D006217 ORTHO05D008480 2.0e-98 364.4 709 82.8
TPR.G38418 Trifolium pratense HOM05D006217 ORTHO05D008480 3.5e-98 363.6 712 82.7
BcaC08g46912 Brassica carinata HOM05D006217 ORTHO05D008480 1.9e-96 357.8 692 74.4
PGR044G0185 Punica granatum HOM05D006217 ORTHO05D008480 8.0e-95 352.4 668 86.5
Lalb_Chr12g0201281 Lupinus albus HOM05D006217 ORTHO05D008480 1.8e-94 351.3 712 81.9
CsaV3_1G008120 Cucumis sativus L. HOM05D006217 ORTHO05D008480 9.8e-93 345.5 668 85.3
CAN.G853.39 Capsicum annuum HOM05D006217 ORTHO05D008480 1.1e-91 342.0 716 81.0
arahy.Tifrunner.gnm1.ann1.C8Z94U Arachis hypogaea HOM05D006217 ORTHO05D008480 1.4e-91 341.7 686 83.5
arahy.Tifrunner.gnm1.ann1.KCM1HB Arachis hypogaea HOM05D006217 ORTHO05D008480 2.4e-91 340.9 669 85.4
Actinidia04949 Actinidia chinensis HOM05D006217 ORTHO05D008480 2.3e-89 334.3 712 80.6
Solyc03g113630.3 Solanum lycopersicum HOM05D006217 ORTHO05D008480 3.0e-89 334.0 667 84.4
Sopen03g032670 Solanum pennellii HOM05D006217 ORTHO05D008480 3.0e-89 334.0 667 84.4
PGSC0003DMG400024573 Solanum tuberosum HOM05D006217 ORTHO05D008480 5.0e-89 333.2 712 80.5
Lj4g0005624 Lotus japonicus HOM05D006217 ORTHO05D008480 1.5e-88 331.6 672 84.2
Gorai.008G298300 Gossypium raimondii HOM05D006217 ORTHO05D008480 9.5e-88 328.9 666 85.4
Medtr4g107210 Medicago truncatula HOM05D006217 ORTHO05D008480 3.6e-87 327.0 707 80.5
Ciclev10018817m.g Citrus clementina HOM05D006217 ORTHO05D008480 1.4e-86 325.1 675 83.4
CANSAT80G1888 Cannabis sativa HOM05D006217 ORTHO05D008480 5.8e-85 319.7 669 84.3
Peaxi162Scf00017g02228 Petunia axillaris HOM05D006217 ORTHO05D008480 7.5e-85 319.3 705 81.1
Gohir.A12G276600 Gossypium hirsutum HOM05D006217 ORTHO05D008480 3.7e-84 317.0 666 84.8
Gohir.D12G277600 Gossypium hirsutum HOM05D006217 ORTHO05D008480 4.9e-84 316.6 666 84.8
Potri.015G069100 Populus trichocarpa HOM05D006217 ORTHO05D008480 8.3e-84 315.8 718 80.4
Sabra15G0093400 Salix brachista HOM05D006217 ORTHO05D008480 4.1e-83 313.5 718 79.8
Migut.I00075 Erythranthe guttata HOM05D006217 ORTHO05D008480 9.2e-83 312.4 677 82.4
Dinv13121 Davidia involucrata HOM05D006217 ORTHO05D008480 1.2e-82 312.0 670 83.6
Phvul.003G195800 Phaseolus vulgaris HOM05D006217 ORTHO05D008480 3.9e-81 307.0 712 78.9
vmacro19344 Vaccinium macrocarpon HOM05D006217 ORTHO05D008480 3.9e-81 307.0 784 61.7
MSTRG.23079 Avicennia marina HOM05D006217 ORTHO05D008480 8.6e-81 305.8 699 79.5
TAR622G0668 Trochodendron aralioides HOM05D006217 ORTHO05D008480 1.5e-80 305.1 688 81.7
Haze_07417 Corylus avellana HOM05D006217 ORTHO05D008480 2.5e-80 304.3 701 81.3
CiPaw.11G034100 Carya illinoinensis HOM05D006217 ORTHO05D008480 7.3e-80 302.8 724 78.5
Glyma.05G032300 Glycine max HOM05D006217 ORTHO05D008480 2.1e-79 301.2 714 79.3
Cpa.g.sc35.13 Carica papaya HOM05D006217 ORTHO05D008480 1.1e-78 298.9 670 82.7
QL10p013967 Quercus lobata HOM05D006217 ORTHO05D008480 8.9e-78 295.8 668 83.1
ClCG01G014190 Citrullus lanatus HOM05D006217 ORTHO05D008480 1.2e-77 295.4 698 79.4
COL.COLO4_26823 Corchorus olitorius HOM05D006217 ORTHO05D008480 1.7e-76 291.6 666 82.4
ECA232G4291 Erigeron canadensis HOM05D006217 ORTHO05D008480 2.2e-76 291.2 708 78.7
Sed0019903 Sechium edule HOM05D006217 ORTHO05D008480 2.9e-76 290.8 716 78.1
Duzib205G0682 Durio zibethinus HOM05D006217 ORTHO05D008480 1.9e-75 288.1 666 82.6
Rhsim08G0164000 Rhododendron simsii HOM05D006217 ORTHO05D008480 9.2e-75 285.8 734 75.5
Cc04_g16120 Coffea canephora HOM05D006217 ORTHO05D008480 2.1e-74 284.6 171 76.6
Glyma.17G094300 Glycine max HOM05D006217 ORTHO05D008480 1.3e-73 282.0 708 78.8
THA.LOC104809230 Tarenaya hassleriana HOM05D006217 ORTHO05D008480 1.7e-73 281.6 671 82.0
AT1G74850 Arabidopsis thaliana HOM05D006217 ORTHO05D008480 8.6e-73 279.3 670 82.1
AL2G34730 Arabidopsis lyrata HOM05D006217 ORTHO05D008480 1.5e-72 278.5 668 82.2
Aa31LG4G5060 Aethionema arabicum HOM05D006217 ORTHO05D008480 5.6e-72 276.6 674 81.0
Carub.0002s2163 Capsella rubella HOM05D006217 ORTHO05D008480 9.5e-72 275.8 668 81.9
Thhalv10018112m.g Eutrema salsugineum HOM05D006217 ORTHO05D008480 1.6e-71 275.0 668 82.0
SalBow5G1548 Salvia bowleyana HOM05D006217 ORTHO05D008480 2.1e-71 274.6 713 77.6
C06p48860 Brassica napus HOM05D006217 ORTHO05D008480 8.1e-71 272.7 668 81.6
BolC6t39922H Brassica oleracea HOM05D006217 ORTHO05D008480 8.1e-71 272.7 668 81.6
HanXRQChr16g0503451 Helianthus annuus HOM05D006217 ORTHO05D008480 8.1e-71 272.7 673 80.1
BcaC08g46950 Brassica carinata HOM05D006217 ORTHO05D008480 1.4e-70 271.9 712 77.9
A07p40490 Brassica napus HOM05D006217 ORTHO05D008480 2.4e-70 271.2 707 78.6
BraA07t31592Z Brassica rapa HOM05D006217 ORTHO05D008480 2.4e-70 271.2 707 78.6
PSO832G0921 Papaver somniferum HOM05D006217 ORTHO05D008480 3.1e-70 270.8 720 75.7
TWI15G0191 Tripterygium wilfordii HOM05D006217 ORTHO05D008480 5.2e-70 270.0 722 77.4
ATR0681G229 Amborella trichopoda HOM05D006217 ORTHO05D008480 2.0e-69 268.1 710 71.1
PSO591G0410 Papaver somniferum HOM05D006217 ORTHO05D008480 2.6e-69 267.7 720 75.4
Sp5g29980 Schrenkiella parvula HOM05D006217 ORTHO05D008480 2.6e-69 267.7 668 81.0
Hma1.2p1_0572F.1_g181080 Hydrangea macrophylla HOM05D006217 ORTHO05D008480 1.7e-68 265.0 605 88.3
SGA_v2.0_scaffold56G20089 Striga asiatica HOM05D006217 ORTHO05D008480 1.2e-66 258.8 713 75.7
FAN08G1390 Fragaria x ananassa HOM05D006217 ORTHO05D008480 6.0e-66 256.5 256 82.4
FAN18G2370 Fragaria x ananassa HOM05D006217 ORTHO05D008480 6.0e-66 256.5 273 79.1
MBI15_g21026_MAGBIO Magnolia biondii HOM05D006217 ORTHO05D008480 1.3e-65 255.4 680 74.1
CDE10G0083 Ceratophyllum demersum HOM05D006217 ORTHO05D008480 6.6e-65 253.1 714 71.4
FAN04G0516 Fragaria x ananassa HOM05D006217 ORTHO05D008480 1.1e-64 252.3 225 89.3
FAN13G2523 Fragaria x ananassa HOM05D006217 ORTHO05D008480 1.5e-64 251.9 265 79.6
HPP92_019917 Vanilla planifolia HOM05D006217 ORTHO05D008480 1.5e-64 251.9 666 77.6
Lsat_1_v5_gn_4_74540 Lactuca sativa HOM05D006217 ORTHO05D008480 2.5e-64 251.1 662 80.1
Thecc.03G001400 Theobroma cacao HOM05D006217 ORTHO05D008480 2.1e-63 248.1 221 89.1
CARHR068170 Cardamine hirsuta HOM05D006217 ORTHO05D008480 4.7e-63 246.9 223 88.3
CDE10G0055 Ceratophyllum demersum HOM05D006217 ORTHO05D008480 3.1e-62 244.2 714 71.1
VMungo1215G2521 Vigna mungo HOM05D006217 ORTHO05D008480 4.6e-58 230.3 271 76.0
unitig_750.g28484 Utricularia gibba HOM05D006217 ORTHO05D008480 8.7e-57 226.1 127 81.1
Os03g0824100 Oryza sativa ssp. japonica HOM05D006217 ORTHO05D008480 1.9e-56 224.9 658 57.1
GSVIVG01007844001 Vitis vinifera HOM05D006217 ORTHO05D008480 6.2e-55 219.9 126 79.4
BcaC08g46908 Brassica carinata HOM05D006217 ORTHO05D008480 4.9e-52 210.3 692 62.6
Zm00001eb331750 Zea mays HOM05D006217 ORTHO05D008480 1.6e-50 205.3 656 58.1
SEGI_07964 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 2.7e-50 204.5 666 70.1
AagrBONN_evm.TU.Sc2ySwM_362.2637 Anthoceros agrestis HOM05D006217 ORTHO05D008480 1.6e-47 195.3 206 80.6
Mapoly0003s0152 Marchantia polymorpha HOM05D006217 ORTHO05D008480 2.4e-46 191.4 230 73.5
SMO353G0114 Selaginella moellendorffii HOM05D006217 ORTHO05D008480 3.1e-46 191.0 655 74.0
CARHR068160 Cardamine hirsuta HOM05D006217 ORTHO05D008480 3.5e-42 177.6 106 76.4
Pp3c11_11830 Physcomitrium patens HOM05D006217 ORTHO05D008480 5.1e-41 173.7 204 75.5
CBR_g63077 Chara braunii HOM05D006217 ORTHO05D008480 1.1e-38 166.0 110 64.5
VMungo1215G1148 Vigna mungo HOM05D006217 ORTHO05D008480 8.4e-36 156.4 95 73.7
ECA232G0106 Erigeron canadensis HOM05D006217 ORTHO05D008480 9.3e-35 152.9 111 64.0
unitig_750.g28482 Utricularia gibba HOM05D006217 ORTHO05D008480 2.4e-30 138.3 83 72.3
SEGI_32227 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 5.3e-30 137.1 106 62.3
AUR62021792 Chenopodium quinoa HOM05D006217 ORTHO05D008480 7.2e-27 126.7 142 97.9
TAR374G1103 Trochodendron aralioides HOM05D006217 ORTHO05D008480 2.4e-22 111.7 89 62.9
Lsat_1_v5_gn_3_59501 Lactuca sativa HOM05D001195 ORTHO05D001138 7.7e-13 80.1 48 66.7
Dinv02652 Davidia involucrata HOM05D006217 ORTHO05D008480 8.5e-12 76.6 69 60.9
FvH4_5g08849 Fragaria vesca HOM05D006217 ORTHO05D008480 1.6e-10 72.4 81 43.2
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 8.8e-09 66.6 154 27.9
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 4.4e-08 64.3 101 32.7
CBR_g10873 Chara braunii HOM05D006217 ORTHO05D023528 7.4e-08 63.5 94 31.9
AagrBONN_evm.TU.Sc2ySwM_117.1008 Anthoceros agrestis HOM05D006414 ORTHO05D007780 1.7e-07 62.4 92 37.0
Cc08_g10160 Coffea canephora HOM05D000001 ORTHO05D009891 3.7e-07 61.2 77 40.3
Actinidia37684 Actinidia chinensis HOM05D006217 ORTHO05D011532 1.8e-06 58.9 85 41.2
COL.COLO4_23853 Corchorus olitorius HOM05D000001 ORTHO05D009891 1.8e-06 58.9 77 39.0
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 2.4e-06 58.5 167 22.8
Sed0017741 Sechium edule HOM05D006217 ORTHO05D011532 2.4e-06 58.5 31 87.1
Mapoly0031s0117 Marchantia polymorpha HOM05D054395 ORTHO05D048776 3.1e-06 58.2 136 32.4
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 4.1e-06 57.8 129 29.5
CARHR098020 Cardamine hirsuta HOM05D000001 ORTHO05D009494 5.3e-06 57.4 161 29.8
Pp3c14_19310 Physcomitrium patens HOM05D006217 ORTHO05D021269 5.3e-06 57.4 73 41.1
AagrBONN_evm.TU.Sc2ySwM_117.1400 Anthoceros agrestis HOM05D006217 ORTHO05D023528 9.1e-06 56.6 132 29.5
Pp3c4_4900 Physcomitrium patens HOM05D006217 ORTHO05D005119 9.1e-06 56.6 96 32.3


User provided reference genes

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