Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 0.0e+00 1585.1 794 100.0
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1136.3 794 72.5
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1081.2 785 71.5
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 1.2e-293 1013.1 787 68.1
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 3.3e-291 1005.0 798 66.2
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 5.1e-260 901.4 784 60.6
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 3.6e-258 895.2 796 59.4
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 4.2e-254 881.7 795 58.4
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 6.0e-253 877.9 787 59.0
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 1.0e-252 877.1 788 58.1
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 1.8e-252 876.3 804 58.2
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 5.3e-249 864.8 782 56.6
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 1.5e-248 863.2 795 57.2
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 6.5e-247 857.8 805 58.3
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 1.9e-246 856.3 796 56.5
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 3.5e-245 852.0 797 57.6
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 2.3e-244 849.4 784 57.8
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 3.3e-243 845.5 779 57.0
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 7.4e-243 844.3 801 56.7
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 9.6e-243 844.0 798 55.6
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 1.4e-241 840.1 794 56.3
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 5.9e-240 834.7 789 55.4
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 1.3e-239 833.6 785 56.1
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 3.2e-238 828.9 786 56.0
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 4.2e-238 828.6 788 55.5
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 7.2e-238 827.8 788 56.0
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 1.6e-237 826.6 786 56.0
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 2.1e-237 826.2 785 55.4
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 2.1e-237 826.2 786 55.6
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 4.6e-237 825.1 796 56.2
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 1.0e-236 823.9 789 56.0
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 1.1e-235 820.5 785 54.9
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 4.3e-235 818.5 794 56.4
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 7.4e-235 817.8 790 54.7
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 1.3e-234 817.0 804 54.7
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 1.6e-234 816.6 784 55.7
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 4.1e-233 812.0 791 54.7
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 2.6e-232 809.3 786 54.5
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 4.5e-232 808.5 799 53.4
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 2.9e-231 805.8 828 52.2
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 5.0e-231 805.1 1004 46.6
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 6.5e-231 804.7 782 54.7
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.1e-230 803.9 804 54.7
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 1.9e-230 803.1 787 54.3
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 1.9e-230 803.1 793 54.5
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 2.5e-230 802.7 804 54.7
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 3.2e-230 802.4 810 53.2
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 3.2e-230 802.4 786 54.2
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 9.4e-230 800.8 804 54.4
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 2.1e-229 799.7 796 54.8
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 2.1e-229 799.7 795 54.1
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 6.1e-229 798.1 787 55.4
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 2.3e-228 796.2 787 55.7
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 1.5e-227 793.5 783 53.1
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 2.0e-227 793.1 794 54.2
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 2.0e-227 793.1 790 53.5
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 2.0e-227 793.1 790 53.4
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 9.7e-227 790.8 790 53.7
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 6.3e-226 788.1 782 55.9
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 8.2e-226 787.7 787 53.7
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 1.1e-225 787.3 753 55.0
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 1.8e-225 786.6 790 53.4
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 4.1e-225 785.4 786 53.9
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 4.1e-225 785.4 790 54.1
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 5.3e-225 785.0 780 53.6
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 3.4e-224 782.3 779 54.6
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 2.2e-223 779.6 786 52.8
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 6.5e-223 778.1 830 51.7
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 1.1e-222 777.3 786 52.7
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 4.2e-222 775.4 783 52.4
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 7.9e-221 771.2 804 53.2
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 1.8e-220 770.0 814 51.7
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 1.8e-220 770.0 881 50.2
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 2.2e-218 763.1 787 52.9
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 2.0e-216 756.5 786 52.2
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 2.6e-216 756.1 791 51.8
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 9.4e-214 747.7 795 50.2
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 1.2e-213 747.3 787 51.1
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 1.4e-212 743.8 785 51.1
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 1.8e-212 743.4 799 49.6
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 1.6e-208 730.3 787 49.4
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 3.2e-206 722.6 812 48.5
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 2.1e-205 719.9 786 50.4
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 2.7e-200 703.0 829 48.1
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.4e-196 690.6 653 57.0
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 9.2e-193 677.9 786 48.1
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 6.4e-186 655.2 669 53.5
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 4.6e-184 649.0 790 46.2
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 4.9e-170 602.4 804 45.1
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 3.0e-143 513.5 447 60.2
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 3.8e-138 496.5 787 39.9
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 7.9e-136 488.8 800 38.2
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.2e-128 464.9 656 43.6
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 2.3e-119 434.1 806 35.2
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 1.9e-113 414.5 808 35.3
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 2.7e-104 384.0 409 50.4
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 4.5e-99 366.7 547 38.4
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 7.7e-99 365.9 651 36.9
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 1.0e-82 312.4 312 52.9
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 5.2e-79 300.1 218 67.4
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 2.4e-76 291.2 308 53.2
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 4.9e-69 266.9 348 46.6
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 3.9e-66 257.3 188 66.0
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 9.9e-54 216.1 228 52.6
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 1.2e-51 209.1 195 58.5
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 1.4e-36 159.1 156 55.1
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 3.6e-32 144.4 678 26.0
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.4e-31 142.5 214 36.4
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 2.6e-30 138.3 203 40.4
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 3.1e-23 114.8 150 40.7
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 1.9e-17 95.5 494 24.3
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 3.3e-17 94.7 608 21.2
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 8.2e-16 90.1 107 48.6
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 1.1e-15 89.7 58 69.0
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 5.8e-14 84.0 53 69.8
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 1.8e-10 72.4 115 39.1
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 1.3e-08 66.2 53 62.3
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 3.7e-08 64.7 48 58.3
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 8.2e-08 63.5 48 58.3
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 5.9e-06 57.4 48 60.4


User provided reference genes

Program Settings