Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 2.8e-249 864.8 422 100.0
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 7.8e-167 590.9 414 69.3
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 1.7e-161 573.2 413 68.0
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 7.9e-151 537.7 419 63.5
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 5.5e-128 461.8 331 68.3
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 5.3e-115 418.7 420 48.8
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 1.2e-114 417.5 421 50.6
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 2.8e-108 396.4 421 47.3
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 2.6e-106 389.8 424 47.4
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 5.0e-105 385.6 420 45.5
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 2.1e-103 380.2 420 46.7
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 4.7e-103 379.0 419 43.7
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 6.1e-103 378.6 419 44.9
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 4.0e-102 375.9 420 45.2
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 6.7e-102 375.2 421 44.9
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 2.6e-101 373.2 418 44.5
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 3.3e-101 372.9 421 43.9
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 9.7e-101 371.3 418 45.7
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 1.7e-100 370.5 414 45.7
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 2.2e-100 370.2 418 45.2
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 2.2e-100 370.2 418 45.2
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 2.4e-99 366.7 423 44.7
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 3.1e-99 366.3 418 45.2
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 3.1e-99 366.3 418 44.3
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 1.6e-98 364.0 419 43.2
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 2.0e-98 363.6 424 43.6
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 2.0e-98 363.6 420 44.0
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 1.3e-97 360.9 420 44.0
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 5.0e-97 359.0 424 45.3
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 5.0e-97 359.0 389 46.8
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 8.5e-97 358.2 423 44.2
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 1.5e-96 357.5 422 42.7
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.9e-96 357.1 418 44.3
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 2.5e-96 356.7 419 43.2
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 3.2e-96 356.3 416 45.0
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 5.5e-96 355.5 419 45.3
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 5.5e-96 355.5 424 43.2
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 5.5e-96 355.5 419 43.2
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 7.2e-96 355.1 421 43.9
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 1.2e-95 354.4 420 43.3
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 1.2e-95 354.4 417 43.2
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 1.0e-94 351.3 423 44.2
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 1.8e-94 350.5 419 43.4
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 4.0e-94 349.4 416 43.3
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 5.2e-94 349.0 424 42.5
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 5.2e-94 349.0 420 41.2
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 8.8e-94 348.2 423 44.2
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 1.2e-93 347.8 422 41.7
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 2.0e-93 347.1 422 42.7
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 4.4e-93 345.9 419 42.2
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 4.4e-93 345.9 418 41.9
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 4.4e-93 345.9 426 43.0
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 5.7e-93 345.5 421 41.8
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 7.5e-93 345.1 420 44.3
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 9.8e-93 344.7 410 42.2
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 1.3e-92 344.4 423 42.1
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 2.2e-92 343.6 420 44.0
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 2.8e-92 343.2 420 44.0
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 2.8e-92 343.2 421 43.7
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 3.7e-92 342.8 419 42.0
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 1.1e-91 341.3 419 41.8
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 1.4e-91 340.9 423 43.7
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 2.4e-91 340.1 422 41.5
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 2.4e-91 340.1 415 44.3
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 3.1e-91 339.7 418 41.1
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 5.4e-91 339.0 416 43.8
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 7.0e-91 338.6 422 41.9
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 1.2e-90 337.8 422 41.2
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 1.2e-90 337.8 419 41.3
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 2.0e-90 337.0 418 41.6
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 2.0e-90 337.0 420 41.9
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 3.5e-90 336.3 423 42.6
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 1.0e-89 334.7 420 41.7
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 2.3e-89 333.6 423 42.1
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 2.3e-89 333.6 419 40.8
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 6.6e-89 332.0 422 41.5
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 8.6e-89 331.6 429 42.0
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 1.5e-88 330.9 422 40.8
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 1.5e-88 330.9 422 42.4
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 3.3e-88 329.7 420 41.4
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 1.2e-87 327.8 364 45.9
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 8.0e-87 325.1 403 41.7
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 3.6e-79 299.7 350 43.7
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 3.0e-78 296.6 336 43.8
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 7.5e-77 292.0 419 37.9
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 3.7e-76 289.7 424 39.2
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 2.3e-73 280.4 419 35.1
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 6.2e-71 272.3 387 40.1
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 1.1e-64 251.5 362 39.2
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 1.9e-59 234.2 419 34.4
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 4.1e-59 233.0 298 40.6
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 7.1e-51 205.7 269 40.5
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 3.2e-43 180.3 365 31.8
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.6e-42 177.9 255 34.5
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 2.1e-34 151.0 430 28.6
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 1.4e-27 128.3 353 30.0
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 4.8e-23 113.2 119 46.2
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.1e-14 85.5 379 25.6
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 2.0e-08 64.7 67 44.8


User provided reference genes

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