Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.4e-153 546.2 265 100.0
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.7e-95 353.2 257 70.8
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 9.6e-54 214.5 271 45.0
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.6e-51 206.5 270 44.4
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.3e-50 204.1 270 44.8
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 3.0e-39 166.4 264 39.0
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 1.7e-26 124.0 275 37.1
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 2.2e-26 123.6 293 33.1
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 6.5e-26 122.1 273 35.5
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 7.1e-25 118.6 270 34.1
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 1.0e-23 114.8 276 35.1
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 1.8e-23 114.0 278 33.5
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 8.7e-23 111.7 304 32.2
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 4.3e-22 109.4 267 36.0
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 7.4e-22 108.6 295 33.2
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 2.2e-21 107.1 285 32.6
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 2.2e-21 107.1 306 33.0
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 4.1e-20 102.8 271 33.2
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 5.3e-20 102.4 304 31.6
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 5.3e-20 102.4 289 31.5
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 5.3e-20 102.4 289 31.5
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 1.4e-17 94.4 306 30.4
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 1.9e-17 94.0 349 28.9
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 3.2e-17 93.2 273 32.6
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.1e-16 90.5 177 38.4
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 3.6e-16 89.7 292 30.8
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 1.4e-15 87.8 308 28.6
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 1.4e-15 87.8 287 32.4
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 2.3e-15 87.0 287 31.4
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 2.3e-15 87.0 287 32.1
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 3.9e-15 86.3 318 29.9
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 6.7e-15 85.5 263 28.9
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 8.8e-15 85.1 264 28.8
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 1.5e-14 84.3 270 28.1
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 4.3e-14 82.8 256 30.1
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 4.3e-14 82.8 265 28.7
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 4.3e-14 82.8 265 29.1
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 4.3e-14 82.8 265 28.7
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 9.7e-14 81.6 276 30.4
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 1.7e-13 80.9 256 29.7
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 2.2e-13 80.5 167 35.3
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.2e-13 80.5 294 28.2
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 2.8e-13 80.1 276 28.6
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 4.8e-13 79.3 256 30.5
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 4.8e-13 79.3 274 28.1
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 8.2e-13 78.6 256 30.1
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 1.4e-12 77.8 276 28.6
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 1.8e-12 77.4 258 29.8
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.8e-12 77.4 267 30.0
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 2.4e-12 77.0 307 28.0
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 3.1e-12 76.6 270 26.7
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 3.1e-12 76.6 298 27.9
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 5.3e-12 75.9 201 35.3
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 5.3e-12 75.9 175 37.1
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 6.9e-12 75.5 311 26.7
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 6.9e-12 75.5 176 34.1
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 1.2e-11 74.7 284 29.9
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 2.6e-11 73.6 176 33.5
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 3.4e-11 73.2 275 28.7
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 4.5e-11 72.8 124 37.9
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 5.9e-11 72.4 180 32.8
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 7.7e-11 72.0 269 27.5
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 1.3e-10 71.2 286 28.0
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 2.9e-10 70.1 175 32.6
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 3.8e-10 69.7 173 37.0
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 3.8e-10 69.7 170 32.9
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 5.0e-10 69.3 204 30.4
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 8.5e-10 68.6 140 34.3
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 2.5e-09 67.0 264 26.1
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 4.2e-09 66.2 271 28.0
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 4.2e-09 66.2 129 37.2
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 5.5e-09 65.9 276 28.3
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 7.2e-09 65.5 306 25.5
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 3.6e-08 63.2 121 34.7
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 4.7e-08 62.8 269 27.1
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 4.7e-08 62.8 283 28.3
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 7.9e-08 62.0 267 28.5
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 1.4e-07 61.2 258 26.7
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 1.8e-07 60.8 158 34.8
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 2.3e-07 60.5 188 30.9
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 5.1e-07 59.3 128 34.4
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 6.7e-07 58.9 160 33.8
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 6.7e-07 58.9 196 29.1
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 8.8e-07 58.5 90 43.3
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 2.0e-06 57.4 116 34.5
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 9.7e-06 55.1 115 31.3


User provided reference genes

Program Settings