Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 6.4e-37 156.8 72 100.0
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 4.8e-24 114.0 67 77.6
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 1.1e-20 102.8 67 68.7
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 5.5e-20 100.5 68 67.6
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 1.2e-19 99.4 68 64.7
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 2.7e-19 98.2 68 66.2
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 2.7e-19 98.2 68 66.2
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 1.0e-18 96.3 68 64.7
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 3.9e-18 94.4 68 60.3
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 5.1e-18 94.0 69 63.8
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 5.1e-18 94.0 68 63.2
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 5.1e-18 94.0 68 60.3
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 5.1e-18 94.0 68 60.3
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 1.1e-17 92.8 68 61.8
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 4.3e-17 90.9 64 65.6
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 5.7e-17 90.5 69 58.0
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 7.4e-17 90.1 64 60.9
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 7.4e-17 90.1 64 60.9
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 7.4e-17 90.1 64 60.9
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 7.4e-17 90.1 63 63.5
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 7.4e-17 90.1 63 63.5
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 7.4e-17 90.1 66 54.5
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 9.7e-17 89.7 66 53.0
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.6e-16 89.0 64 65.6
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 2.2e-16 88.6 72 56.9
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 6.3e-16 87.0 66 51.5
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.3e-16 87.0 66 59.1
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 1.4e-15 85.9 75 56.0
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.4e-15 85.9 64 60.9
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 1.8e-15 85.5 68 57.4
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 1.8e-15 85.5 64 57.8
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 2.4e-15 85.1 67 52.2
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 2.4e-15 85.1 67 52.2
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 2.4e-15 85.1 66 57.6
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 2.4e-15 85.1 64 57.8
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 3.1e-15 84.7 66 57.6
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 3.1e-15 84.7 79 54.4
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 4.1e-15 84.3 66 50.0
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 4.1e-15 84.3 66 50.0
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 1.5e-14 82.4 67 50.7
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 1.5e-14 82.4 67 50.7
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 1.5e-14 82.4 67 50.7
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 1.5e-14 82.4 67 50.7
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 1.5e-14 82.4 72 51.4
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 1.5e-14 82.4 68 51.5
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.0e-14 82.0 72 54.2
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 3.4e-14 81.3 69 56.5
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 3.4e-14 81.3 76 55.3
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 4.5e-14 80.9 70 50.0
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 4.5e-14 80.9 68 50.0
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 5.9e-14 80.5 76 53.9
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 5.9e-14 80.5 76 53.9
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 7.7e-14 80.1 66 54.5
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 7.7e-14 80.1 74 51.4
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 7.7e-14 80.1 61 57.4
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.0e-13 79.7 61 57.4
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.0e-13 79.7 61 57.4
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 1.0e-13 79.7 61 52.5
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 1.0e-13 79.7 69 53.6
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 1.3e-13 79.3 69 50.7
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 1.3e-13 79.3 76 55.3
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 1.3e-13 79.3 69 56.5
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 1.3e-13 79.3 66 56.1
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.7e-13 79.0 68 51.5
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 2.9e-13 78.2 74 54.1
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 3.8e-13 77.8 61 52.5
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 5.0e-13 77.4 61 49.2
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 6.5e-13 77.0 68 51.5
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 6.5e-13 77.0 61 50.8
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 6.5e-13 77.0 65 50.8
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 8.5e-13 76.6 61 55.7
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.5e-13 76.6 71 52.1
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 1.1e-12 76.3 68 48.5
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 1.1e-12 76.3 75 50.7
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 1.1e-12 76.3 75 50.7
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 1.1e-12 76.3 65 53.8
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 1.1e-12 76.3 64 56.2
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 1.9e-12 75.5 66 51.5
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 1.9e-12 75.5 67 52.2
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.9e-12 75.5 61 54.1
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 3.2e-12 74.7 48 66.7
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 4.2e-12 74.3 63 55.6
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.2e-12 74.3 63 55.6
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 7.2e-12 73.6 61 49.2
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 7.2e-12 73.6 66 50.0
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 1.2e-11 72.8 63 44.4
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 2.1e-11 72.0 71 49.3
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 2.7e-11 71.6 75 42.7
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 6.1e-11 70.5 111 36.0
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 6.1e-11 70.5 50 64.0
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 1.4e-10 69.3 64 51.6
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 1.4e-10 69.3 103 37.9
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 1.8e-10 68.9 80 42.5
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 2.3e-10 68.6 70 48.6
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 3.0e-10 68.2 62 50.0
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 3.9e-10 67.8 63 52.4
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 3.9e-10 67.8 39 82.1
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 5.1e-10 67.4 49 57.1
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 6.7e-10 67.0 78 42.3
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 6.7e-10 67.0 59 47.5
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 8.8e-10 66.6 61 44.3
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 1.1e-09 66.2 49 59.2
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 1.5e-09 65.9 61 42.6
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 2.5e-09 65.1 80 40.0
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 4.3e-09 64.3 45 62.2
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 1.3e-08 62.8 105 35.2
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 2.2e-08 62.0 44 59.1
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 2.8e-08 61.6 68 44.1
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.8e-08 61.6 45 60.0
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 1.4e-07 59.3 47 42.6
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 3.1e-07 58.2 44 56.8
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 5.3e-07 57.4 49 46.9
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.3e-07 57.4 54 50.0
FAN16G3049 Fragaria x ananassa HOM05D004774 ORTHO05D005514 9.1e-07 56.6 53 58.5
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 9.1e-07 56.6 43 60.5
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.0e-06 55.5 52 57.7
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.5e-06 54.3 46 56.5
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 4.5e-06 54.3 49 51.0


User provided reference genes

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