Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 7.6e-156 555.1 284 100.0
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 1.3e-99 368.2 307 67.8
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 9.5e-98 362.1 282 70.9
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 1.8e-96 357.8 303 65.3
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 7.0e-85 319.3 270 65.9
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 8.1e-81 305.8 302 58.3
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 4.0e-80 303.5 308 58.4
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 5.2e-80 303.1 290 60.0
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 6.8e-80 302.8 265 61.9
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 6.8e-80 302.8 265 61.1
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 8.9e-80 302.4 272 61.8
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 2.0e-79 301.2 266 61.3
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 4.4e-79 300.1 293 60.1
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 5.8e-79 299.7 307 57.0
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 9.9e-79 298.9 291 59.8
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 2.2e-78 297.7 300 57.0
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 2.2e-78 297.7 269 60.6
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 3.7e-78 297.0 292 59.9
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 6.4e-78 296.2 302 57.9
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 6.4e-78 296.2 293 59.4
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 8.3e-78 295.8 301 56.5
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 8.3e-78 295.8 242 66.1
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 8.3e-78 295.8 269 59.9
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 1.1e-77 295.4 245 64.9
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 1.1e-77 295.4 306 56.5
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 1.4e-77 295.0 300 56.7
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 3.2e-77 293.9 312 56.1
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 4.1e-77 293.5 251 62.2
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 4.1e-77 293.5 285 57.9
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 4.1e-77 293.5 296 56.8
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 7.1e-77 292.7 314 55.4
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 9.2e-77 292.4 303 56.8
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 1.2e-76 292.0 299 55.2
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 1.2e-76 292.0 263 62.0
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 1.6e-76 291.6 292 58.2
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 2.1e-76 291.2 248 62.9
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 2.7e-76 290.8 291 58.4
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 2.7e-76 290.8 302 55.6
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 2.7e-76 290.8 243 64.2
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 3.5e-76 290.4 301 56.1
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 6.0e-76 289.7 246 65.0
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 1.0e-75 288.9 269 60.6
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 3.0e-75 287.3 301 55.8
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 3.9e-75 287.0 245 62.0
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 5.1e-75 286.6 246 64.6
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 5.1e-75 286.6 233 66.1
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 5.1e-75 286.6 282 57.1
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 8.6e-75 285.8 244 63.1
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 8.6e-75 285.8 244 63.1
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 8.6e-75 285.8 310 56.1
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 1.1e-74 285.4 287 56.8
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 1.1e-74 285.4 241 63.1
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 1.1e-74 285.4 243 63.8
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 1.5e-74 285.0 237 63.7
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 1.5e-74 285.0 245 63.3
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 1.5e-74 285.0 246 64.2
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 2.5e-74 284.3 232 64.7
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 2.5e-74 284.3 262 60.3
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 4.3e-74 283.5 235 63.4
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 5.6e-74 283.1 307 54.1
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 7.3e-74 282.7 232 64.2
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 7.3e-74 282.7 330 51.8
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 7.3e-74 282.7 246 61.4
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 9.5e-74 282.3 262 59.2
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 9.5e-74 282.3 247 64.4
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.2e-73 282.0 227 65.2
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 1.6e-73 281.6 316 53.5
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 2.1e-73 281.2 293 56.3
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 2.1e-73 281.2 254 59.4
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 3.6e-73 280.4 247 61.1
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 4.7e-73 280.0 292 56.8
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 1.1e-72 278.9 282 56.4
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 1.1e-72 278.9 263 59.3
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 1.4e-72 278.5 240 61.2
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 1.8e-72 278.1 300 54.0
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 2.4e-72 277.7 237 62.4
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 2.4e-72 277.7 303 54.5
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 3.1e-72 277.3 246 61.4
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 3.1e-72 277.3 320 52.8
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 5.2e-72 276.6 248 60.1
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 6.8e-72 276.2 316 52.8
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 2.0e-71 274.6 246 61.4
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 2.6e-71 274.2 268 57.1
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 2.6e-71 274.2 268 57.1
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 2.6e-71 274.2 268 57.1
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 2.6e-71 274.2 246 61.0
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 4.4e-71 273.5 272 57.4
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 4.4e-71 273.5 272 57.4
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 2.9e-70 270.8 254 57.9
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 2.9e-70 270.8 241 59.8
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 3.8e-70 270.4 296 53.0
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 3.8e-70 270.4 236 60.6
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 7.1e-69 266.2 265 55.8
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 7.1e-69 266.2 304 51.3
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 9.2e-69 265.8 237 59.5
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 1.3e-67 261.9 276 52.9
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 2.8e-65 254.2 243 58.0
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 1.3e-62 245.4 292 50.7
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 8.7e-59 232.6 160 73.1
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 3.2e-45 187.6 232 49.1
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 7.1e-45 186.4 169 61.5
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 7.9e-44 183.0 136 66.9
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 1.4e-40 172.2 270 41.5
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 2.2e-30 138.3 204 40.2
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 2.1e-28 131.7 195 41.0
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 3.2e-21 107.8 202 33.2
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 1.2e-20 105.9 189 35.4
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 7.9e-20 103.2 294 31.3
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 1.7e-17 95.5 181 32.0
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 6.3e-17 93.6 236 30.1
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.5e-10 72.4 43 79.1
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.5e-10 72.4 41 80.5
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 1.5e-10 72.4 41 80.5
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.5e-10 72.4 43 74.4
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 4.4e-10 70.9 62 54.8
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 5.7e-10 70.5 43 74.4
Gohir.D05G336850 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.8e-08 65.5 49 69.4
HanXRQChr09g0277491 Helianthus annuus HOM05D000001 ORTHO05D009704 7.0e-08 63.5 176 29.0
BcaNung05253 Brassica carinata HOM05D006705 ORTHO05D008179 1.6e-07 62.4 43 65.1
AT4G25270 Arabidopsis thaliana HOM05D000001 ORTHO05D009335 2.9e-06 58.2 136 27.2
Gohir.D06G157800 Gossypium hirsutum HOM05D000485 ORTHO05D000341 2.9e-06 58.2 35 74.3
Sc07g0000360 Simmondsia chinensis HOM05D000001 ORTHO05D000003 6.5e-06 57.0 256 25.0


User provided reference genes

Program Settings