Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g041130 Amaranthus hybridus HOM05D008762 ORTHO05D011252 0.0e+00 1393.3 719 100.0
Ah.08g219520 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.2e-62 243.4 676 30.3
Ah.01g013230 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.2e-44 184.9 436 29.6
Ah.13g066110 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.0e-41 174.5 400 30.5
Ah.06g186480 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.8e-39 167.2 391 30.2
Ah.03g145270 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.5e-37 160.6 423 27.2
Ah.05g173080 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.9e-36 157.1 549 28.2
Ah.02g118210 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.4e-35 155.6 396 28.5
Ah.02g117550 Amaranthus hybridus HOM05D008762 ORTHO05D011252 9.3e-35 152.9 444 29.1
Ah.08g221330 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.8e-33 148.7 441 27.4
Ah.04g161050 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.6e-32 143.7 189 38.1
Ah.05g171570 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.8e-29 133.7 143 48.3
Ah.15g098970 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.8e-29 133.7 172 36.0
Ah.10g026890 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.7e-28 132.1 492 26.4
Ah.03g144970 Amaranthus hybridus HOM05D008762 ORTHO05D011252 6.4e-28 130.2 168 35.1
Ah.12g060360 Amaranthus hybridus HOM05D008762 ORTHO05D011252 7.4e-16 90.1 164 36.6
Ah.07g198450 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.7e-15 87.8 114 44.7
Ah.04g155770 Amaranthus hybridus HOM05D008762 ORTHO05D062114 1.4e-14 85.9 170 34.7
Ah.09g226780 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.9e-13 80.5 92 46.7
Ah.06g184660 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.3e-12 79.3 123 34.1
Ah.16g108500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 8.5e-12 76.6 251 31.1
Ah.07g201540 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.5e-11 75.1 153 34.6
Ah.07g196620 Amaranthus hybridus HOM05D008762 ORTHO05D031041 1.6e-10 72.4 165 34.5
Ah.10g026690 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.6e-10 71.2 151 37.7
Ah.05g173090 Amaranthus hybridus HOM05D008762 ORTHO05D011252 7.9e-10 70.1 98 41.8
Ah.10g037270 Amaranthus hybridus HOM05D005124 ORTHO05D005914 1.8e-09 68.9 109 36.7
Ah.08g219500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.3e-09 68.6 101 35.6
Rhsim09G0140400 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.7e-09 66.6 119 28.6
Sc15g0001330 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.5e-08 65.1 119 32.8
Ah.15g100500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.7e-08 63.9 116 36.2
Sc17g0002350 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.2e-07 62.0 119 32.8
Gohir.A01G136601 Gossypium hirsutum HOM05D000003 ORTHO05D015081 3.7e-07 61.2 85 28.2
Pp3c1_31280 Physcomitrium patens HOM05D003264 ORTHO05D003276 6.3e-07 60.5 86 43.0
vmacro12106 Vaccinium macrocarpon HOM05D000081 ORTHO05D009356 6.3e-07 60.5 115 26.1
Ah.07g197260 Amaranthus hybridus HOM05D008762 ORTHO05D059943 8.2e-07 60.1 110 35.5
Pp3c11_21430 Physcomitrium patens HOM05D003264 ORTHO05D003276 1.1e-06 59.7 94 44.7
vmacro00512 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 1.4e-06 59.3 121 26.4
Pp3c7_7590 Physcomitrium patens HOM05D003264 ORTHO05D003276 1.8e-06 58.9 96 44.8
Sc17g0002300 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.4e-06 58.5 119 30.3
Zm00001eb199160 Zea mays HOM05D003264 ORTHO05D003276 2.4e-06 58.5 70 47.1
Ah.12g063050 Amaranthus hybridus HOM05D000030 ORTHO05D000009 3.1e-06 58.2 148 29.7
Aqoxy6G00798 Aquilegia oxysepala HOM05D003264 ORTHO05D003276 3.1e-06 58.2 66 47.0
BcaB02g09777 Brassica carinata HOM05D003264 ORTHO05D003276 3.1e-06 58.2 84 45.2
BcaC01g02677 Brassica carinata HOM05D003264 ORTHO05D003276 3.1e-06 58.2 84 45.2
A06p30920 Brassica napus HOM05D003264 ORTHO05D003276 3.1e-06 58.2 84 45.2
C03p62050 Brassica napus HOM05D003264 ORTHO05D003276 3.1e-06 58.2 84 45.2
BolC3t18466H Brassica oleracea HOM05D003264 ORTHO05D003276 3.1e-06 58.2 84 45.2
BraA06t26031Z Brassica rapa HOM05D003264 ORTHO05D003276 3.1e-06 58.2 84 45.2
ATR0118G028 Amborella trichopoda HOM05D003264 ORTHO05D003276 4.1e-06 57.8 66 48.5
CDE10G0548 Ceratophyllum demersum HOM05D003264 ORTHO05D003276 4.1e-06 57.8 66 47.0
CDE10G0834 Ceratophyllum demersum HOM05D003264 ORTHO05D003276 4.1e-06 57.8 66 47.0
SEGI_17731 Sequoiadendron giganteum HOM05D003264 ORTHO05D003276 4.1e-06 57.8 99 40.4
Carub.0008s2499 Capsella rubella HOM05D003264 ORTHO05D003276 5.3e-06 57.4 84 45.2
TPR.G10450 Trifolium pratense HOM05D003264 ORTHO05D003276 5.3e-06 57.4 93 41.9
CARHR278110 Cardamine hirsuta HOM05D003264 ORTHO05D003276 6.9e-06 57.0 84 45.2
Aa31LG1G17700 Aethionema arabicum HOM05D003264 ORTHO05D003276 9.1e-06 56.6 84 45.2
AL8G41470 Arabidopsis lyrata HOM05D003264 ORTHO05D003276 9.1e-06 56.6 84 45.2
AT5G64200 Arabidopsis thaliana HOM05D003264 ORTHO05D003276 9.1e-06 56.6 84 45.2
Thhalv10004709m.g Eutrema salsugineum HOM05D003264 ORTHO05D003276 9.1e-06 56.6 84 45.2
TAR625G1537 Trochodendron aralioides HOM05D003264 ORTHO05D003276 9.1e-06 56.6 92 41.3


User provided reference genes

Program Settings