Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 6.9e-104 380.6 180 100.0
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 3.5e-47 192.2 151 62.3
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 1.3e-46 190.3 146 65.1
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 1.4e-43 180.3 151 58.3
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 1.8e-43 179.9 151 58.3
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 6.7e-43 177.9 151 58.3
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 8.8e-43 177.6 151 57.6
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 1.5e-42 176.8 146 58.9
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 5.7e-42 174.9 129 65.9
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 7.5e-42 174.5 150 58.0
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 9.7e-42 174.1 137 62.8
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 9.7e-42 174.1 134 64.9
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 1.3e-41 173.7 147 57.8
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.7e-41 173.3 147 58.5
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.7e-41 173.3 147 58.5
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.7e-41 173.3 147 58.5
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.7e-41 173.3 133 63.2
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.7e-41 173.3 133 63.2
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 2.2e-41 172.9 129 65.1
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 2.2e-41 172.9 129 65.1
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 2.2e-41 172.9 129 65.1
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 2.2e-41 172.9 129 65.1
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 2.2e-41 172.9 150 57.3
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 2.8e-41 172.6 147 57.8
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 2.8e-41 172.6 132 62.9
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 3.7e-41 172.2 129 64.3
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 3.7e-41 172.2 129 64.3
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 3.7e-41 172.2 147 57.8
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 3.7e-41 172.2 147 57.1
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 4.8e-41 171.8 129 64.3
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 4.8e-41 171.8 133 63.2
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 4.8e-41 171.8 129 65.1
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 6.3e-41 171.4 143 60.8
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 6.3e-41 171.4 134 64.2
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 8.2e-41 171.0 129 64.3
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 8.2e-41 171.0 129 64.3
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 8.2e-41 171.0 129 64.3
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 8.2e-41 171.0 150 57.3
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 1.4e-40 170.2 151 57.0
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.4e-40 170.2 147 56.5
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 1.8e-40 169.9 132 62.1
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 1.8e-40 169.9 133 61.7
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 1.8e-40 169.9 129 63.6
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 1.8e-40 169.9 129 63.6
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.8e-40 169.9 147 56.5
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 2.4e-40 169.5 147 56.5
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 2.4e-40 169.5 129 63.6
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 3.1e-40 169.1 133 63.2
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 3.1e-40 169.1 133 63.2
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 3.1e-40 169.1 147 57.1
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 5.3e-40 168.3 150 56.7
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 7.0e-40 167.9 147 54.4
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 9.1e-40 167.5 132 61.4
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 9.1e-40 167.5 147 55.8
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.6e-39 166.8 146 56.2
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 2.0e-39 166.4 132 61.4
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 2.0e-39 166.4 151 53.6
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 2.0e-39 166.4 131 61.1
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 2.7e-39 166.0 129 62.8
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 3.5e-39 165.6 129 63.6
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 3.5e-39 165.6 150 54.0
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 4.5e-39 165.2 130 60.8
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 4.5e-39 165.2 147 56.5
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 4.5e-39 165.2 147 56.5
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 5.9e-39 164.9 127 63.8
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 5.9e-39 164.9 127 63.8
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 7.7e-39 164.5 147 54.4
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 7.7e-39 164.5 147 54.4
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 7.7e-39 164.5 147 54.4
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 7.7e-39 164.5 129 62.8
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 7.7e-39 164.5 147 53.7
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.3e-38 163.7 147 55.1
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.3e-38 163.7 147 55.1
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.3e-38 163.7 147 54.4
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 1.3e-38 163.7 147 55.1
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 1.7e-38 163.3 142 54.9
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 1.7e-38 163.3 147 53.7
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 2.2e-38 162.9 132 59.8
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 2.2e-38 162.9 147 54.4
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 2.2e-38 162.9 129 61.2
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 2.2e-38 162.9 142 55.6
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 2.9e-38 162.5 129 60.5
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 3.8e-38 162.2 151 53.0
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 3.8e-38 162.2 147 55.1
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 3.8e-38 162.2 147 55.1
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 5.0e-38 161.8 147 55.1
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 5.0e-38 161.8 129 60.5
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 5.0e-38 161.8 129 60.5
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 5.0e-38 161.8 130 61.5
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 6.5e-38 161.4 130 60.0
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 8.5e-38 161.0 129 60.5
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 8.5e-38 161.0 147 54.4
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 8.5e-38 161.0 129 61.2
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.1e-37 160.6 129 61.2
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 1.5e-37 160.2 142 54.9
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 1.5e-37 160.2 142 54.9
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 1.5e-37 160.2 142 54.9
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 1.5e-37 160.2 142 54.9
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 1.5e-37 160.2 129 59.7
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 1.5e-37 160.2 130 57.7
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 1.5e-37 160.2 132 59.1
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 1.9e-37 159.8 147 53.1
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 1.9e-37 159.8 142 54.9
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 1.9e-37 159.8 131 59.5
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 2.5e-37 159.5 147 52.4
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 7.2e-37 157.9 147 51.7
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 7.2e-37 157.9 147 51.7
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 7.2e-37 157.9 147 51.7
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 7.2e-37 157.9 129 59.7
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 1.2e-36 157.1 129 58.9
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 2.1e-36 156.4 146 50.0
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.0e-35 154.1 183 46.4
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 1.8e-35 153.3 132 57.6
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 1.2e-34 150.6 150 51.3
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.2e-34 150.6 150 51.3
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.2e-34 150.6 150 51.3
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.2e-34 150.6 150 51.3
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.2e-34 150.6 150 51.3
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 5.7e-34 148.3 115 64.3
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 3.7e-33 145.6 132 53.0
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 3.7e-33 145.6 132 53.0
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 8.3e-33 144.4 129 53.5
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 8.3e-33 144.4 129 53.5
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 1.1e-32 144.1 143 48.3
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 2.4e-32 142.9 146 47.9
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 9.1e-32 141.0 144 47.2
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.0e-31 139.8 132 55.3
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 1.0e-30 137.5 144 46.5
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 5.0e-30 135.2 115 57.4
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 2.5e-29 132.9 172 40.7
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 3.2e-29 132.5 114 55.3
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 3.2e-29 132.5 114 57.0
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 9.5e-29 131.0 110 57.3
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 9.5e-29 131.0 145 46.2
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 3.6e-28 129.0 110 58.2
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 1.4e-27 127.1 87 62.1
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 4.0e-27 125.6 153 45.1
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 1.2e-26 124.0 110 54.5
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 7.5e-26 121.3 114 50.0
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 9.8e-26 120.9 129 54.3
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 1.6e-23 113.6 128 40.6
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 3.5e-23 112.5 133 49.6
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 3.8e-22 109.0 88 53.4
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 7.3e-21 104.8 128 38.3
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 5.2e-19 98.6 110 49.1
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 9.8e-18 94.4 52 71.2
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 9.8e-18 94.4 52 71.2
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 9.8e-18 94.4 52 71.2
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.3e-17 94.0 111 46.8
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 2.0e-15 86.7 55 67.3
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 5.6e-13 78.6 79 41.8
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 3.6e-12 75.9 92 44.6
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 6.2e-12 75.1 132 31.1
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 1.1e-11 74.3 40 77.5
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 8.9e-11 71.2 110 42.7
Cfa023443 Carpinus fangiana HOM05D004582 ORTHO05D123741 2.6e-10 69.7 85 35.3
Rhsim12G0090000 Rhododendron simsii HOM05D004582 ORTHO05D005507 3.5e-07 59.3 157 33.1


User provided reference genes

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