Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 0.0e+00 1360.5 671 100.0
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 0.0e+00 1160.6 723 79.7
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 5.6e-284 980.7 727 68.4
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 3.4e-281 971.5 703 71.7
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 6.0e-278 960.7 720 66.9
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 7.8e-278 960.3 704 67.2
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 1.3e-277 959.5 705 67.1
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 6.6e-277 957.2 719 66.3
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 1.9e-276 955.7 720 66.5
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 3.3e-276 954.9 589 80.0
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 1.8e-274 949.1 703 66.6
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 1.3e-272 943.0 721 64.8
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 2.9e-272 941.8 722 66.1
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 4.9e-272 941.0 704 66.3
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 1.4e-271 939.5 701 65.8
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 1.9e-271 939.1 701 67.2
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 9.2e-271 936.8 720 65.3
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 6.0e-270 934.1 728 64.4
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 8.7e-269 930.2 870 58.6
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 2.4e-266 922.2 711 66.0
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 3.1e-266 921.8 725 64.0
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 2.6e-265 918.7 721 64.4
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 4.4e-265 917.9 727 63.8
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 5.8e-265 917.5 721 64.2
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.1e-263 913.3 705 64.8
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 3.2e-263 911.8 705 64.8
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 2.1e-262 909.1 723 62.9
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 6.0e-262 907.5 701 65.0
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 6.6e-261 904.0 721 63.5
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 2.4e-258 895.6 706 63.3
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 9.0e-258 893.6 705 64.1
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 4.5e-257 891.3 718 62.3
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 9.9e-257 890.2 732 62.2
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 9.9e-257 890.2 693 63.6
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 1.7e-256 889.4 719 63.4
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 1.7e-256 889.4 665 67.2
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 2.9e-256 888.6 723 62.1
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 3.8e-256 888.3 692 63.7
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 8.4e-256 887.1 717 62.3
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 1.1e-255 886.7 703 63.7
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 1.1e-255 886.7 723 61.7
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 5.4e-255 884.4 693 63.8
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 7.1e-255 884.0 630 68.9
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 9.3e-255 883.6 720 61.1
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 2.3e-253 879.0 716 60.1
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 8.7e-253 877.1 725 60.8
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 1.1e-252 876.7 723 60.7
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 1.5e-252 876.3 723 60.7
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 2.1e-251 872.5 720 61.5
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 3.7e-251 871.7 706 62.3
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 1.1e-250 870.2 706 62.3
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 1.4e-250 869.8 732 60.2
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 9.0e-250 867.1 726 60.7
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 5.8e-249 864.4 718 60.6
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 6.4e-248 860.9 700 61.9
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 1.9e-247 859.4 711 60.5
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 5.5e-247 857.8 684 63.7
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 1.0e-245 853.6 706 59.3
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 1.1e-244 850.1 719 59.1
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 1.1e-244 850.1 707 59.5
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 2.5e-244 849.0 721 58.5
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 9.6e-244 847.0 707 59.1
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.6e-243 846.3 711 59.1
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 1.6e-243 846.3 722 59.3
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 2.8e-243 845.5 702 58.7
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 1.8e-242 842.8 706 58.8
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 3.1e-242 842.0 721 60.2
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 5.3e-242 841.3 735 57.7
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 1.5e-241 839.7 706 58.6
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 2.6e-241 839.0 706 58.5
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 3.4e-241 838.6 700 58.7
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 5.8e-241 837.8 706 58.1
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 1.0e-240 837.0 706 58.5
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 1.0e-240 837.0 706 58.5
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 1.7e-240 836.3 706 58.5
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 8.4e-240 833.9 695 61.0
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 2.3e-237 825.9 661 62.3
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 5.7e-236 821.2 728 56.3
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 2.8e-235 818.9 641 63.8
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 5.3e-234 814.7 699 59.7
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 5.3e-234 814.7 701 60.5
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 1.3e-232 810.1 541 72.1
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 8.5e-232 807.4 706 57.5
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 3.2e-231 805.4 631 63.7
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 9.4e-231 803.9 729 56.4
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 3.6e-230 802.0 700 58.1
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 2.5e-228 795.8 718 57.5
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 2.5e-228 795.8 593 66.3
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 3.3e-228 795.4 701 59.8
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 9.7e-228 793.9 988 47.2
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 3.1e-226 788.9 637 62.0
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 7.2e-223 777.7 572 66.1
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 9.7e-220 767.3 722 55.4
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 2.3e-213 746.1 570 64.0
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 1.2e-190 670.6 982 43.4
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 1.8e-189 666.8 690 52.3
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 1.2e-177 627.5 455 68.1
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 3.5e-169 599.4 731 44.9
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 1.4e-162 577.4 485 58.1
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 3.4e-156 556.2 699 43.5
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 3.9e-144 516.2 363 68.0
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 8.4e-139 498.4 621 42.5
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.8e-128 464.2 404 57.4
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 6.3e-110 402.5 365 53.7
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 3.9e-104 383.3 287 62.7
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 2.7e-81 307.4 225 69.8
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 1.4e-77 295.0 254 59.8
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 8.6e-67 259.2 250 54.0
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 6.8e-64 249.6 275 49.1
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 6.8e-64 249.6 289 47.4
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 9.5e-58 229.2 150 65.3
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 4.4e-55 220.3 166 71.1
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 5.2e-40 170.2 247 39.3
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.7e-35 155.2 247 38.1
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.3e-35 154.8 218 39.9
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 2.5e-34 151.4 141 54.6
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 9.3e-29 132.9 157 43.3
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 9.6e-26 122.9 160 40.0
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.3e-25 122.5 109 58.7
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 1.8e-24 118.6 87 63.2
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 1.8e-24 118.6 83 66.3
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.2e-23 115.9 98 55.1
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 2.6e-23 114.8 83 65.1
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 4.5e-23 114.0 107 57.9
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 3.5e-20 104.4 109 47.7
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 6.0e-20 103.6 110 51.8
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 1.9e-18 98.6 72 66.7
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.6e-17 95.5 61 65.6
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 2.8e-17 94.7 57 68.4
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 3.7e-17 94.4 109 45.0
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 1.1e-16 92.8 109 44.0
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 5.3e-16 90.5 75 64.0
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 5.8e-15 87.0 91 52.7
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 1.3e-14 85.9 625 21.8
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 3.8e-14 84.3 129 38.0
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-13 82.4 212 30.7
MCO04G172 Micromonas commoda HOM05D004619 ORTHO05D005738 1.4e-13 82.4 454 23.3
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 9.3e-13 79.7 58 58.6
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 2.1e-12 78.6 41 78.0
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 1.0e-11 76.3 57 61.4
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 3.9e-11 74.3 166 28.9
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 6.7e-11 73.6 55 65.5
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 1.1e-10 72.8 57 57.9
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 1.1e-10 72.8 57 57.9
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 1.1e-10 72.8 73 50.7
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 7.4e-10 70.1 57 56.1
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 1.3e-09 69.3 70 52.9
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 5.3e-08 63.9 82 50.0
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 5.3e-08 63.9 35 77.1
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 3.8e-06 57.8 72 47.2
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 6.5e-06 57.0 29 86.2


User provided reference genes

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