Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 4.8e-163 577.8 294 100.0
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 1.7e-136 489.6 322 77.3
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 8.5e-128 460.7 294 80.3
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 4.2e-127 458.4 337 72.7
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 2.7e-121 439.1 324 71.3
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 3.7e-107 392.1 323 63.8
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 7.0e-106 387.9 312 65.4
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 4.5e-105 385.2 324 62.7
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 1.3e-104 383.6 324 63.9
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 2.5e-103 379.4 309 65.7
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 7.3e-103 377.9 324 62.0
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.2e-102 377.1 323 62.5
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 3.6e-102 375.6 312 62.5
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 1.0e-101 374.0 323 62.5
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 1.8e-101 373.2 324 61.4
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 1.8e-101 373.2 325 61.2
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 1.8e-101 373.2 324 61.7
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 1.8e-101 373.2 312 62.5
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 2.3e-101 372.9 326 60.7
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 2.3e-101 372.9 320 62.8
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 5.2e-101 371.7 320 63.1
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 8.9e-101 370.9 309 63.4
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 5.7e-100 368.2 318 61.0
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 7.5e-100 367.9 319 61.1
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 9.8e-100 367.5 319 61.4
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 1.3e-99 367.1 329 59.9
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 2.2e-99 366.3 320 62.5
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 2.9e-99 365.9 324 61.1
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 4.9e-99 365.2 322 61.2
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 1.4e-98 363.6 325 61.8
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 2.4e-98 362.8 324 59.6
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 3.2e-98 362.5 320 61.6
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 3.2e-98 362.5 320 61.6
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 4.1e-98 362.1 318 60.7
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 9.2e-98 360.9 301 62.1
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 2.7e-97 359.4 320 61.9
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 2.7e-97 359.4 301 62.5
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 5.9e-97 358.2 319 59.2
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 1.7e-96 356.7 328 59.8
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 1.7e-96 356.7 311 62.4
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 3.0e-96 355.9 311 62.4
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 3.0e-96 355.9 364 54.9
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 3.9e-96 355.5 304 61.8
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 1.1e-95 354.0 328 58.5
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 3.3e-95 352.4 312 61.5
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 4.3e-95 352.1 312 61.2
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 5.6e-95 351.7 320 59.7
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 2.8e-94 349.4 292 63.7
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 2.8e-94 349.4 301 61.8
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 3.6e-94 349.0 317 59.0
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 4.7e-94 348.6 320 59.1
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 8.0e-94 347.8 324 59.6
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 1.0e-93 347.4 320 58.1
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 1.4e-93 347.1 324 59.6
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 4.0e-93 345.5 324 59.0
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 5.2e-93 345.1 338 58.6
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 5.2e-93 345.1 321 57.6
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.5e-92 343.6 313 59.1
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 1.5e-92 343.6 292 59.2
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 2.0e-92 343.2 312 60.3
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 2.6e-92 342.8 301 60.1
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 3.4e-92 342.4 311 58.8
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 4.4e-92 342.0 310 59.7
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 4.4e-92 342.0 324 57.4
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 5.8e-92 341.7 312 59.3
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 9.8e-92 340.9 312 59.9
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 9.8e-92 340.9 319 58.3
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 9.8e-92 340.9 324 57.4
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 1.7e-91 340.1 316 57.6
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 3.7e-91 339.0 312 60.6
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 8.3e-91 337.8 303 59.4
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 1.1e-90 337.4 316 58.5
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 1.4e-90 337.0 316 58.5
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 1.9e-90 336.7 325 56.6
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 4.1e-90 335.5 300 60.7
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 7.0e-90 334.7 314 58.0
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 9.2e-90 334.3 300 60.7
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 1.2e-89 334.0 322 57.8
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 3.5e-89 332.4 296 61.1
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 7.8e-89 331.3 290 60.7
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 7.8e-89 331.3 325 57.8
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 1.3e-88 330.5 319 56.1
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 1.3e-88 330.5 297 60.9
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 1.7e-88 330.1 323 55.4
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 3.0e-88 329.3 313 60.1
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 3.0e-88 329.3 322 57.5
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 4.7e-86 322.0 316 57.0
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 6.8e-85 318.2 314 56.7
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 4.4e-84 315.5 306 57.2
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 9.8e-84 314.3 332 53.3
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 1.7e-83 313.5 324 55.9
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 2.2e-83 313.2 225 72.0
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 1.1e-82 310.8 323 54.8
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 1.1e-82 310.8 326 54.3
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.9e-82 310.1 222 68.5
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 3.2e-82 309.3 322 55.0
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 2.1e-81 306.6 287 57.1
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 6.0e-81 305.1 333 54.4
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 1.0e-80 304.3 240 63.8
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 2.3e-80 303.1 296 54.7
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 4.0e-77 292.4 315 50.5
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 1.2e-73 280.8 277 56.3
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 7.3e-71 271.6 341 46.3
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 1.4e-69 267.3 226 62.8
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.4e-69 267.3 223 62.8
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 1.9e-63 246.9 287 47.7
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 9.6e-63 244.6 310 46.5
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 7.6e-60 235.0 230 57.0
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 2.2e-59 233.4 201 63.2
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 1.4e-50 204.1 302 44.0
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 5.5e-50 202.2 352 39.2
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 3.8e-43 179.5 110 77.3
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 3.0e-40 169.9 150 60.7
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 1.1e-37 161.4 203 50.2
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 1.8e-29 134.0 268 35.8
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 2.2e-27 127.1 82 72.0
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 2.2e-27 127.1 82 72.0
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 2.2e-27 127.1 87 67.8
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.1e-26 124.8 86 67.4
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 4.5e-20 102.8 178 39.9
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 1.0e-19 101.7 351 25.4
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 1.9e-18 97.4 95 58.9
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 1.9e-18 97.4 95 58.9
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 4.2e-18 96.3 91 60.4
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 1.6e-17 94.4 71 64.8
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 4.7e-17 92.8 82 63.4
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 3.0e-16 90.1 346 25.1
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 8.2e-14 82.0 73 57.5
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.4e-13 81.3 39 92.3
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 2.6e-07 60.5 34 82.4
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 4.4e-07 59.7 44 68.2
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 5.7e-07 59.3 133 31.6
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 7.5e-07 58.9 48 62.5


User provided reference genes

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