Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 8.2e-216 753.4 381 100.0
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 8.0e-187 657.1 407 82.3
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 5.6e-172 607.8 403 76.2
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 4.7e-171 604.7 404 74.8
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 4.7e-171 604.7 404 74.8
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 1.8e-170 602.8 403 75.2
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 2.3e-170 602.4 390 76.2
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 4.0e-170 601.7 406 73.6
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 5.8e-169 597.8 417 72.2
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 8.3e-168 594.0 401 73.8
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 1.1e-167 593.6 379 79.7
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 3.2e-167 592.0 404 73.5
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 4.1e-167 591.7 400 74.2
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 5.4e-167 591.3 483 66.0
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 1.2e-166 590.1 404 72.5
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 1.6e-166 589.7 416 71.9
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 3.0e-165 585.5 403 72.2
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 3.9e-165 585.1 407 72.0
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 8.6e-165 583.9 401 71.8
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 8.6e-165 583.9 401 73.8
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 1.1e-164 583.6 404 72.5
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 4.3e-164 581.6 416 70.4
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 5.6e-164 581.3 403 70.7
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 7.3e-164 580.9 401 72.6
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 7.3e-164 580.9 405 72.1
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 1.6e-163 579.7 403 71.0
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 2.8e-163 578.9 401 70.6
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 3.1e-162 575.5 402 71.1
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 4.0e-162 575.1 403 73.0
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 2.0e-161 572.8 400 73.0
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 2.6e-161 572.4 401 71.3
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 4.4e-161 571.6 402 69.7
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 1.7e-160 569.7 403 70.0
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 1.7e-160 569.7 400 70.0
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 1.7e-160 569.7 405 72.6
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 2.9e-160 568.9 403 70.5
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 2.9e-160 568.9 401 70.3
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 2.9e-160 568.9 403 69.5
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 4.9e-160 568.2 401 69.6
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 4.9e-160 568.2 402 71.4
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 6.4e-160 567.8 401 70.1
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 6.4e-160 567.8 403 71.0
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 8.4e-160 567.4 402 71.9
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 8.4e-160 567.4 400 70.5
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 1.1e-159 567.0 405 71.1
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 1.4e-159 566.6 403 69.5
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 3.2e-159 565.5 400 71.0
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 3.2e-159 565.5 403 69.7
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 5.4e-159 564.7 403 70.2
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 5.4e-159 564.7 401 70.8
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 4.6e-158 561.6 403 70.5
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 7.8e-158 560.8 442 66.1
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 7.8e-158 560.8 419 69.5
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 1.3e-157 560.1 401 70.1
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.3e-157 560.1 403 70.5
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 2.3e-157 559.3 394 69.5
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 3.0e-157 558.9 394 71.6
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 6.6e-157 557.8 401 70.1
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 7.3e-156 554.3 401 70.1
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 1.6e-155 553.1 494 59.5
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 3.6e-155 552.0 401 70.1
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 3.6e-155 552.0 402 68.7
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 1.4e-154 550.1 404 69.6
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 3.1e-154 548.9 401 68.6
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 5.3e-154 548.1 401 67.8
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 1.2e-153 547.0 398 68.3
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 2.0e-153 546.2 401 67.8
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 7.6e-153 544.3 401 68.3
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 2.2e-152 542.7 404 68.3
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 2.2e-152 542.7 401 67.8
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 2.2e-152 542.7 401 67.6
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 3.8e-152 542.0 399 66.4
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 8.4e-152 540.8 419 64.9
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 1.9e-151 539.7 434 65.0
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 4.2e-151 538.5 379 73.9
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 1.6e-150 536.6 369 72.4
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 4.6e-150 535.0 411 67.4
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 1.3e-149 533.5 401 65.6
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 3.9e-149 531.9 405 68.6
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 2.5e-148 529.3 438 62.8
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 2.5e-148 529.3 423 65.0
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 1.2e-145 520.4 400 67.2
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 4.5e-145 518.5 380 68.9
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 8.4e-144 514.2 380 68.2
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 9.3e-143 510.8 403 65.3
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 6.7e-141 504.6 381 66.9
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 1.1e-140 503.8 380 67.4
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 1.3e-136 490.3 402 65.2
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.1e-132 477.2 340 71.2
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 9.6e-132 474.2 464 55.4
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 2.0e-129 466.5 334 70.7
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 4.9e-128 461.8 401 60.6
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 1.9e-124 449.9 275 80.0
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.1e-122 444.1 365 63.3
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 5.9e-121 438.3 464 53.2
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 1.4e-119 433.7 294 73.8
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 4.2e-119 432.2 401 58.4
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 5.7e-116 421.8 444 53.8
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 1.0e-112 411.0 405 51.4
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 2.6e-105 386.3 405 48.9
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 5.9e-105 385.2 246 77.2
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 8.0e-102 374.8 343 60.3
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 2.5e-95 353.2 246 69.9
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 1.0e-93 347.8 230 76.1
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 1.6e-89 334.0 405 44.2
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 2.0e-89 333.6 405 42.5
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 5.9e-89 332.0 403 44.2
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 2.3e-85 320.1 458 43.2
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.2e-84 317.8 265 63.4
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 2.0e-84 317.0 218 72.9
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 9.5e-79 298.1 190 78.9
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 2.8e-75 286.6 258 59.7
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 6.6e-72 275.4 382 43.5
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 3.7e-67 259.6 229 59.0
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 2.0e-52 210.7 226 47.8
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 3.4e-52 209.9 279 45.5
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 6.4e-51 205.7 174 60.9
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 1.1e-47 194.9 412 30.1
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 4.2e-42 176.4 418 30.9
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 5.1e-40 169.5 301 38.5
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 8.1e-38 162.2 135 60.0
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 1.1e-37 161.8 479 28.0
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 7.6e-36 155.6 99 72.7
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 1.7e-35 154.5 512 26.2
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 2.2e-35 154.1 98 73.5
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.9e-34 151.0 130 61.5
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.7e-32 144.4 116 65.5
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 1.9e-31 141.0 111 66.7
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.9e-31 141.0 98 63.3
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.9e-31 141.0 98 63.3
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.7e-25 120.6 95 57.9
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 9.0e-21 105.5 70 75.7
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 1.3e-19 101.7 68 73.5
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.7e-19 101.3 68 73.5
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 1.3e-16 91.7 79 57.0
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.3e-15 87.0 71 60.6
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 5.7e-15 86.3 64 64.1
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 5.3e-13 79.7 52 71.2
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.2e-12 78.6 58 56.9
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 4.5e-12 76.6 57 66.7
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.9e-10 71.2 49 73.5
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 5.1e-08 63.2 36 77.8
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 2.5e-07 60.8 58 55.2
FvH4_5g20991 Fragaria vesca HOM05D005098 ORTHO05D031290 5.7e-07 59.7 88 42.0
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 7.4e-07 59.3 68 51.5


User provided reference genes

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