Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 0.0e+00 1153.3 590 100.0
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 1.9e-251 872.5 594 75.8
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.7e-247 858.2 591 74.5
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.5e-240 836.3 546 77.5
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 4.1e-230 801.6 592 71.5
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 2.8e-223 778.9 607 66.7
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 9.1e-222 773.9 605 65.1
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 1.2e-221 773.5 614 65.8
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 1.7e-220 769.6 592 68.4
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 8.5e-220 767.3 606 66.2
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.5e-219 766.5 607 65.2
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 1.0e-217 760.4 606 65.5
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 1.4e-217 760.0 607 65.6
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 2.6e-216 755.7 604 65.6
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 1.7e-215 753.1 609 65.5
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 1.1e-214 750.4 610 64.1
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 4.1e-214 748.4 614 64.0
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 5.4e-214 748.0 606 64.9
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 7.7e-213 744.2 599 64.1
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 8.5e-212 740.7 608 64.3
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 2.5e-211 739.2 606 64.2
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 3.2e-211 738.8 609 61.2
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 2.1e-210 736.1 596 63.9
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 2.1e-210 736.1 602 64.6
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 4.7e-210 734.9 610 63.1
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 6.1e-210 734.6 596 63.9
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 6.1e-210 734.6 605 62.8
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 8.0e-210 734.2 609 62.6
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 1.0e-209 733.8 593 63.6
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.8e-209 733.0 610 63.6
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 4.0e-209 731.9 596 63.6
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 8.8e-209 730.7 606 62.7
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 8.8e-209 730.7 606 62.7
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 2.0e-208 729.6 608 64.0
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 4.4e-208 728.4 607 62.4
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 7.5e-208 727.6 608 62.2
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 2.2e-207 726.1 610 63.1
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 2.2e-207 726.1 594 62.6
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 2.8e-207 725.7 603 62.2
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 2.8e-207 725.7 610 62.6
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 2.8e-207 725.7 644 60.4
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 3.7e-207 725.3 617 61.9
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 4.9e-207 724.9 621 60.2
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.1e-206 723.8 598 63.2
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 1.1e-206 723.8 598 63.5
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 1.4e-206 723.4 594 62.5
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 2.4e-206 722.6 606 61.7
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 5.4e-206 721.5 605 62.8
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 5.4e-206 721.5 624 61.2
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 1.2e-205 720.3 594 63.1
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 2.0e-205 719.5 610 63.0
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 7.7e-205 717.6 606 61.1
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 5.0e-204 714.9 598 62.7
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 5.0e-204 714.9 603 62.0
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 5.0e-204 714.9 605 61.3
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 8.6e-204 714.1 591 63.8
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 1.5e-203 713.4 605 61.7
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 4.3e-203 711.8 608 61.3
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 9.5e-203 710.7 597 62.3
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 1.2e-202 710.3 614 61.2
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 1.6e-202 709.9 594 62.3
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 1.6e-202 709.9 607 60.6
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 2.1e-202 709.5 614 61.1
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 2.8e-202 709.1 599 62.6
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 2.8e-202 709.1 613 61.2
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 6.1e-202 708.0 602 61.1
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.0e-201 707.2 629 59.6
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 1.4e-201 706.8 608 61.0
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 2.3e-201 706.1 599 61.3
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 3.0e-201 705.7 605 60.5
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 4.0e-201 705.3 599 61.9
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 6.8e-201 704.5 609 60.3
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 1.5e-200 703.4 593 61.7
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 2.0e-200 703.0 600 61.3
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 3.4e-200 702.2 605 60.2
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 5.7e-200 701.4 600 61.2
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 5.7e-200 701.4 612 62.1
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 7.5e-200 701.0 612 60.6
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 2.9e-199 699.1 593 61.4
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 1.1e-198 697.2 617 60.3
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 2.4e-198 696.0 600 61.0
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 2.4e-198 696.0 589 60.4
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 4.1e-198 695.3 605 60.2
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 7.0e-198 694.5 570 63.0
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.2e-197 693.7 597 61.5
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 2.0e-197 693.0 600 60.8
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 2.0e-197 693.0 595 61.2
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 1.0e-196 690.6 612 60.6
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 8.6e-196 687.6 602 61.3
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 3.3e-195 685.6 606 60.4
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 1.6e-194 683.3 611 60.4
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 1.4e-193 680.2 616 59.1
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 4.0e-193 678.7 597 60.6
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 6.8e-193 677.9 611 58.9
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 7.5e-192 674.5 590 59.5
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 1.2e-189 667.2 607 59.3
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 2.3e-188 662.9 556 62.2
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 5.6e-187 658.3 621 57.3
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 2.1e-186 656.4 595 57.6
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 2.8e-186 656.0 546 64.1
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 8.9e-185 651.0 605 57.4
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 1.5e-184 650.2 601 59.2
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.2e-183 646.4 601 58.7
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 2.9e-183 646.0 576 59.2
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 1.4e-182 643.7 601 58.4
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.4e-182 643.7 601 58.4
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 2.1e-181 639.8 606 57.4
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 7.8e-181 637.9 601 58.2
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 1.3e-180 637.1 606 57.3
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 5.1e-180 635.2 601 58.2
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 8.6e-180 634.4 596 57.6
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 7.6e-176 621.3 604 55.0
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 9.9e-176 620.9 605 57.4
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 3.2e-174 615.9 591 56.0
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.0e-172 610.9 586 57.2
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 1.8e-169 600.1 528 60.6
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 7.6e-168 594.7 607 54.9
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 7.1e-166 588.2 605 53.2
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 5.4e-158 562.0 595 51.6
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 1.2e-157 560.8 593 49.9
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.9e-155 553.5 593 52.6
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 3.1e-153 546.2 630 48.1
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 2.7e-149 533.1 480 60.0
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 6.9e-145 518.5 609 47.8
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 5.0e-135 485.7 629 45.2
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.1e-134 484.6 435 57.9
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.6e-117 427.6 327 67.9
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 7.9e-117 425.2 402 60.0
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 7.9e-117 425.2 505 48.5
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 1.8e-113 414.1 461 46.9
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 5.9e-112 409.1 749 35.2
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 6.1e-109 399.1 372 58.1
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 2.7e-104 383.6 593 39.0
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.5e-102 377.9 317 62.8
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.0e-84 318.5 354 51.1
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 4.3e-78 296.6 603 34.0
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 2.1e-77 294.3 331 51.1
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 6.6e-71 272.7 632 34.0
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 6.0e-64 249.6 183 70.5
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 2.8e-61 240.7 206 61.7
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 3.8e-58 230.3 162 68.5
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 1.5e-54 218.4 222 52.3
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.2e-49 200.7 135 67.4
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 2.4e-41 174.5 367 37.1
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 7.4e-38 162.9 119 68.1
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 6.4e-34 149.8 120 61.7
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.3e-31 142.1 113 63.7
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 3.0e-31 141.0 113 63.7
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 1.5e-30 138.7 116 62.1
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 3.3e-30 137.5 171 48.5
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 7.6e-27 126.3 80 68.8
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 8.4e-26 122.9 96 62.5
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.4e-25 122.1 96 62.5
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 7.1e-25 119.8 164 44.5
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 6.0e-24 116.7 88 65.9
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 6.7e-23 113.2 180 42.8
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 1.6e-21 108.6 82 67.1
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 6.5e-18 96.7 111 53.2
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 1.7e-13 82.0 63 60.3
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 8.2e-13 79.7 60 60.0
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 9.1e-12 76.3 56 62.5
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 1.4e-07 62.4 41 70.7
AUR62033049 Chenopodium quinoa HOM05D004159 ORTHO05D138254 2.3e-07 61.6 96 45.8
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 2.3e-07 61.6 35 82.9
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 2.3e-07 61.6 131 35.1
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 2.0e-06 58.5 143 29.4
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 2.0e-06 58.5 39 71.8


User provided reference genes

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