Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g229770 Amaranthus hybridus HOM05D000306 ORTHO05D005993 0.0e+00 1544.3 759 100.0
AUR62040000 Chenopodium quinoa HOM05D000306 ORTHO05D005993 3.8e-305 1051.2 796 67.8
AUR62040306 Chenopodium quinoa HOM05D000306 ORTHO05D005993 1.3e-297 1026.2 761 68.5
Sc14g0001190 Simmondsia chinensis HOM05D000306 ORTHO05D005993 1.7e-244 849.7 840 53.8
Hund09018 Selenicereus undatus HOM05D000306 ORTHO05D005993 1.1e-243 847.0 829 55.0
GSVIVG01029151001 Vitis vinifera HOM05D000306 ORTHO05D005993 8.4e-236 820.8 829 53.0
Dinv41268 Davidia involucrata HOM05D000306 ORTHO05D005993 6.6e-233 811.2 856 52.0
MBI14_g17347_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D005993 4.9e-228 795.0 817 51.9
Lj9A687T82 Lonicera japonica HOM05D000306 ORTHO05D005993 4.2e-227 792.0 838 51.4
Aqoxy7G03117 Aquilegia oxysepala HOM05D000306 ORTHO05D005993 9.3e-227 790.8 834 50.5
EL10Ac8g18271 Beta vulgaris HOM05D000306 ORTHO05D005993 9.3e-227 790.8 650 64.3
RcHm_v2.0_Chr4g0403051 Rosa chinensis HOM05D000306 ORTHO05D005993 1.6e-226 790.0 859 50.2
TAR625G0692 Trochodendron aralioides HOM05D000306 ORTHO05D005993 7.8e-226 787.7 880 50.6
CiPaw.07G190100 Carya illinoinensis HOM05D000306 ORTHO05D005993 1.0e-225 787.3 865 49.8
DCAR_009913 Daucus carota HOM05D000306 ORTHO05D005993 2.3e-225 786.2 809 52.4
FvH4_4g09130 Fragaria vesca HOM05D000306 ORTHO05D005993 8.7e-225 784.3 861 49.2
FAN17G3079 Fragaria x ananassa HOM05D000306 ORTHO05D005993 8.7e-225 784.3 835 50.2
QL02p097337 Quercus lobata HOM05D000306 ORTHO05D005993 4.3e-224 781.9 844 50.7
FAN22G2400 Fragaria x ananassa HOM05D000306 ORTHO05D005993 5.6e-224 781.6 835 50.1
Prupe.1G089300 Prunus persica HOM05D000306 ORTHO05D005993 5.6e-224 781.6 855 49.9
Actinidia04131 Actinidia chinensis HOM05D000306 ORTHO05D005993 2.1e-223 779.6 868 50.0
arahy.Tifrunner.gnm1.ann1.6YA4AW Arachis hypogaea HOM05D000306 ORTHO05D005993 6.2e-223 778.1 770 53.2
Rhsim01G0006800 Rhododendron simsii HOM05D000306 ORTHO05D005993 4.0e-222 775.4 903 48.6
MD13G1267300 Malus domestica HOM05D000306 ORTHO05D005993 1.2e-221 773.9 858 49.4
Sabra06G0131200 Salix brachista HOM05D000306 ORTHO05D005993 5.8e-221 771.5 817 50.7
Lj4g0011507 Lotus japonicus HOM05D000306 ORTHO05D005993 1.3e-220 770.4 816 51.3
CsaV3_1G031330 Cucumis sativus L. HOM05D000306 ORTHO05D005993 8.4e-220 767.7 831 50.8
PSO782G0277 Papaver somniferum HOM05D000306 ORTHO05D005993 1.1e-219 767.3 870 48.9
PSO063G2401 Papaver somniferum HOM05D000306 ORTHO05D005993 2.4e-219 766.1 842 49.5
Nitab4.5_0000244g0320 Nicotiana tabacum HOM05D000306 ORTHO05D005993 3.2e-219 765.8 847 49.2
Sopen07g002910 Solanum pennellii HOM05D000306 ORTHO05D005993 5.4e-219 765.0 839 49.5
MELO3C017490.2 Cucumis melo HOM05D000306 ORTHO05D005993 7.1e-219 764.6 831 50.3
Ciclev10007423m.g Citrus clementina HOM05D000306 ORTHO05D005993 9.3e-219 764.2 872 48.6
Solyc07g006810.3 Solanum lycopersicum HOM05D000306 ORTHO05D005993 9.3e-219 764.2 867 48.6
CANSAT11G2131 Cannabis sativa HOM05D000306 ORTHO05D005993 3.5e-218 762.3 851 48.9
Migut.J01457 Erythranthe guttata HOM05D000306 ORTHO05D005993 3.5e-218 762.3 895 48.3
Cfa013519 Carpinus fangiana HOM05D000306 ORTHO05D005993 4.6e-218 761.9 843 49.6
Ca_21207_v3 Cicer arietinum L. HOM05D000306 ORTHO05D005993 1.3e-217 760.4 813 51.0
Duzib150G0339 Durio zibethinus HOM05D000306 ORTHO05D005993 3.0e-217 759.2 858 49.4
Gorai.013G246300 Gossypium raimondii HOM05D000306 ORTHO05D005993 5.1e-217 758.4 845 50.3
Potri.006G170400 Populus trichocarpa HOM05D000306 ORTHO05D005993 5.1e-217 758.4 862 48.4
Lalb_Chr07g0180301 Lupinus albus HOM05D000306 ORTHO05D005993 6.7e-217 758.1 829 49.7
Glyma.13G094700 Glycine max HOM05D000306 ORTHO05D005993 1.1e-216 757.3 841 49.3
Medtr4g128620 Medicago truncatula HOM05D000306 ORTHO05D005993 1.9e-216 756.5 812 50.1
ClCG06G013170 Citrullus lanatus HOM05D000306 ORTHO05D005993 2.5e-216 756.1 839 49.9
Manes.06G023800 Manihot esculenta HOM05D000306 ORTHO05D005993 3.3e-216 755.7 866 48.5
Sed0027913 Sechium edule HOM05D000306 ORTHO05D005993 3.3e-216 755.7 848 49.1
Gohir.A13G211900 Gossypium hirsutum HOM05D000306 ORTHO05D005993 7.4e-216 754.6 845 50.2
Thecc.09G168600 Theobroma cacao HOM05D000306 ORTHO05D005993 1.6e-215 753.4 868 48.8
Cpa.g.sc95.64 Carica papaya HOM05D000306 ORTHO05D005993 2.1e-215 753.1 856 49.4
HanXRQChr03g0068921 Helianthus annuus HOM05D000306 ORTHO05D005993 2.8e-215 752.7 836 49.4
arahy.Tifrunner.gnm1.ann1.MG2J04 Arachis hypogaea HOM05D000306 ORTHO05D005993 3.7e-215 752.3 841 48.8
SGA_v2.0_scaffold69G23277 Striga asiatica HOM05D000306 ORTHO05D005993 8.1e-215 751.1 891 47.0
Nn8g40500 Nelumbo nucifera HOM05D000306 ORTHO05D005993 1.4e-214 750.4 883 48.0
TWI34G1047 Tripterygium wilfordii HOM05D000306 ORTHO05D005993 3.1e-214 749.2 841 49.1
VMungo1215G0493 Vigna mungo HOM05D000306 ORTHO05D005993 1.2e-213 747.3 837 48.7
CAN.G584.9 Capsicum annuum HOM05D000306 ORTHO05D005993 5.8e-213 745.0 941 45.0
Psat4g011120 Pisum sativum HOM05D000306 ORTHO05D005993 1.7e-212 743.4 819 49.6
Thhalv10012677m.g Eutrema salsugineum HOM05D000306 ORTHO05D005993 2.9e-212 742.7 857 48.1
BcaB08g36111 Brassica carinata HOM05D000306 ORTHO05D005993 4.9e-212 741.9 861 48.4
A03p12730 Brassica napus HOM05D000306 ORTHO05D005993 8.4e-212 741.1 836 49.9
Phvul.003G147900 Phaseolus vulgaris HOM05D000306 ORTHO05D005993 3.2e-211 739.2 837 47.8
BolC3t13934H Brassica oleracea HOM05D000306 ORTHO05D005993 9.3e-211 737.6 828 49.4
MSTRG.19696 Avicennia marina HOM05D000306 ORTHO05D005993 1.2e-210 737.3 891 47.0
AL8G33620 Arabidopsis lyrata HOM05D000306 ORTHO05D005993 6.0e-210 734.9 832 48.1
BcaC04g19951 Brassica carinata HOM05D000306 ORTHO05D005993 2.3e-209 733.0 859 47.7
BraA03t10584Z Brassica rapa HOM05D000306 ORTHO05D005993 5.1e-209 731.9 829 49.0
C09p49460 Brassica napus HOM05D000306 ORTHO05D005993 6.7e-209 731.5 856 47.8
ATR0580G146 Amborella trichopoda HOM05D000306 ORTHO05D005993 1.1e-208 730.7 834 48.0
BraA10t43578Z Brassica rapa HOM05D000306 ORTHO05D005993 3.3e-208 729.2 837 48.5
A10p15010 Brassica napus HOM05D000306 ORTHO05D005993 1.3e-207 727.2 837 48.6
AT5G57590 Arabidopsis thaliana HOM05D000306 ORTHO05D005993 1.6e-207 726.9 857 47.4
BolC9t57799H Brassica oleracea HOM05D000306 ORTHO05D005993 1.6e-207 726.9 846 48.0
C03p14920 Brassica napus HOM05D000306 ORTHO05D005993 3.7e-207 725.7 848 48.2
BcaC01g06481 Brassica carinata HOM05D000306 ORTHO05D005993 4.0e-206 722.2 856 47.9
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 5.3e-206 721.8 823 47.8
CDE02G3177 Ceratophyllum demersum HOM05D000306 ORTHO05D005993 1.5e-205 720.3 822 47.4
Carub.0008s1810 Capsella rubella HOM05D000306 ORTHO05D005993 2.6e-205 719.5 853 47.1
Aa31LG3G13440 Aethionema arabicum HOM05D000306 ORTHO05D005993 5.5e-203 711.8 885 45.4
PGR142G2544 Punica granatum HOM05D000306 ORTHO05D005993 5.5e-203 711.8 849 47.5
SHI02942 Sapria himalayana HOM05D000306 ORTHO05D005993 2.7e-202 709.5 802 48.0
Peaxi162Scf00050g00628 Petunia axillaris HOM05D000306 ORTHO05D005993 3.4e-197 692.6 813 48.5
Hma1.2p1_1022F.1_g248760 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 1.0e-196 691.0 728 52.3
Os08g0245400 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D005993 9.4e-195 684.5 830 46.7
HPP92_013429 Vanilla planifolia HOM05D000306 ORTHO05D005993 2.7e-194 682.9 808 47.3
Zm00001eb412500 Zea mays HOM05D000306 ORTHO05D005993 1.8e-190 670.2 848 45.8
unitig_749.g14164 Utricularia gibba HOM05D000306 ORTHO05D005993 4.1e-190 669.1 891 44.4
TPR.G5323 Trifolium pratense HOM05D000306 ORTHO05D005993 6.9e-190 668.3 713 49.5
Lsat_1_v5_gn_7_54301 Lactuca sativa HOM05D000306 ORTHO05D005993 3.2e-187 659.4 713 49.4
Atru.chr7.720 Acer truncatum HOM05D000306 ORTHO05D005993 1.6e-186 657.1 687 50.4
Cc06_g13480 Coffea canephora HOM05D000306 ORTHO05D005993 9.4e-179 631.3 621 54.6
Mapoly0061s0099 Marchantia polymorpha HOM05D000306 ORTHO05D005993 4.7e-178 629.0 865 42.8
Haze_22119 Corylus avellana HOM05D000306 ORTHO05D005993 4.4e-176 622.5 635 54.0
Hma1.2p1_1423F.1_g282650 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 7.0e-174 615.1 588 57.5
SMO146G0375 Selaginella moellendorffii HOM05D000306 ORTHO05D005993 1.1e-171 607.8 820 41.6
Pp3c17_24020 Physcomitrium patens HOM05D000306 ORTHO05D005993 8.8e-169 598.2 875 39.0
vmacro13109 Vaccinium macrocarpon HOM05D000306 ORTHO05D005993 2.2e-167 593.6 887 42.1
Hma1.2p1_1022F.1_g248750 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 1.3e-164 584.3 559 57.4
Sp6g19290 Schrenkiella parvula HOM05D000306 ORTHO05D005993 5.2e-161 572.4 870 40.5
Nitab4.5_0000937g0040 Nicotiana tabacum HOM05D000306 ORTHO05D005993 5.7e-152 542.3 523 54.9
CBR_g30689 Chara braunii HOM05D000306 ORTHO05D005993 4.5e-149 532.7 892 37.4
SalBow6G4076 Salvia bowleyana HOM05D000306 ORTHO05D005993 1.1e-134 485.0 538 49.8
Gohir.D13G216000 Gossypium hirsutum HOM05D000306 ORTHO05D005993 2.7e-133 480.3 542 48.3
SEGI_35821 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 1.6e-130 471.1 573 45.0
Eucgr.C00186 Eucalyptus grandis HOM05D000306 ORTHO05D005993 1.1e-129 468.4 548 46.5
MCO16G292 Micromonas commoda HOM05D000306 ORTHO05D005993 8.6e-124 448.7 882 34.1
BcaC05g28220 Brassica carinata HOM05D000306 ORTHO05D005993 3.0e-108 397.1 510 43.3
CARHR271360 Cardamine hirsuta HOM05D000306 ORTHO05D005993 2.1e-106 391.0 477 46.8
C05p43000 Brassica napus HOM05D000306 ORTHO05D005993 1.8e-105 387.9 528 41.7
BcaC08g43477 Brassica carinata HOM05D000306 ORTHO05D005993 4.9e-103 379.8 515 41.6
C06p08630 Brassica napus HOM05D000306 ORTHO05D005993 4.9e-103 379.8 515 41.6
C01p37640 Brassica napus HOM05D000306 ORTHO05D005993 1.9e-102 377.9 516 41.9
BolC1t03728H Brassica oleracea HOM05D000306 ORTHO05D005993 2.1e-101 374.4 511 42.1
Cre06.g277200 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D005993 2.3e-100 370.9 942 31.6
C09p62180 Brassica napus HOM05D000306 ORTHO05D005993 4.2e-94 350.1 449 44.5
BraA02t08063Z Brassica rapa HOM05D000306 ORTHO05D005993 4.1e-73 280.4 258 53.9
Cfa024735 Carpinus fangiana HOM05D000306 ORTHO05D005993 9.1e-73 279.3 779 28.0
Hma1.2p1_0863F.1_g230000 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 2.5e-62 244.6 369 43.4
CSS0003956 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 2.6e-56 224.6 262 48.9
Cfa016931 Carpinus fangiana HOM05D000306 ORTHO05D005993 2.8e-50 204.5 221 49.8
CSS0007035 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 9.1e-41 172.9 238 44.5
BcaC03g16218 Brassica carinata HOM05D000306 ORTHO05D005993 2.9e-39 167.9 168 51.8
Cc06_g13470 Coffea canephora HOM05D000306 ORTHO05D005993 3.8e-39 167.5 133 58.6
Haze_22118 Corylus avellana HOM05D000306 ORTHO05D005993 6.6e-31 140.2 146 47.3
BcaB01g04449 Brassica carinata HOM05D000306 ORTHO05D005993 2.3e-28 131.7 269 33.8
BcaC05g25358 Brassica carinata HOM05D000306 ORTHO05D005993 2.0e-27 128.6 168 42.9
SEGI_33461 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 8.3e-26 123.2 90 67.8
BolC2t10024H Brassica oleracea HOM05D000306 ORTHO05D005993 2.7e-24 118.2 78 69.2
MELO3C034648.2 Cucumis melo HOM05D000306 ORTHO05D005993 4.6e-24 117.5 94 60.6
MELO3C033059.2 Cucumis melo HOM05D000306 ORTHO05D005993 1.5e-22 112.5 94 58.5
MELO3C033088.2 Cucumis melo HOM05D000306 ORTHO05D005993 2.5e-22 111.7 94 59.6
MELO3C020066.2 Cucumis melo HOM05D000306 ORTHO05D005993 3.3e-22 111.3 94 58.5
QL02p097286 Quercus lobata HOM05D000306 ORTHO05D005993 5.6e-22 110.5 69 75.4
MELO3C032402.2 Cucumis melo HOM05D000306 ORTHO05D005993 2.8e-21 108.2 84 61.9
MELO3C031202.2 Cucumis melo HOM05D000306 ORTHO05D005993 3.7e-18 97.8 122 48.4
CSS0049760 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 1.9e-17 95.5 99 53.5
arahy.Tifrunner.gnm1.ann1.F592RX Arachis hypogaea HOM05D000306 ORTHO05D007065 2.6e-11 75.1 112 42.0
arahy.Tifrunner.gnm1.ann1.JGW43E Arachis hypogaea HOM05D000306 ORTHO05D005993 4.9e-10 70.9 113 39.8
CSS0028993 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 4.9e-10 70.9 54 63.0
arahy.Tifrunner.gnm1.ann1.HK2K9G Arachis hypogaea HOM05D006158 ORTHO05D007065 4.1e-09 67.8 78 48.7
CSS0029448 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 7.1e-09 67.0 41 70.7
arahy.Tifrunner.gnm1.ann1.S0LUWR Arachis hypogaea HOM05D000306 ORTHO05D007065 1.2e-08 66.2 88 45.5
SEGI_37083 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 1.2e-08 66.2 65 47.7
HanXRQChr14g0446441 Helianthus annuus HOM05D003092 ORTHO05D003977 3.9e-07 61.2 324 21.9
Cc05_g00030 Coffea canephora HOM05D003092 ORTHO05D003977 6.6e-07 60.5 320 21.2
Prupe.3G186500 Prunus persica HOM05D003092 ORTHO05D003977 1.1e-06 59.7 307 21.5
Solyc12g006470.2 Solanum lycopersicum HOM05D003092 ORTHO05D003977 1.5e-06 59.3 165 27.3
Sopen12g002410 Solanum pennellii HOM05D003092 ORTHO05D003977 1.5e-06 59.3 165 27.3
arahy.Tifrunner.gnm1.ann1.EEM62Q Arachis hypogaea HOM05D002203 ORTHO05D007065 1.9e-06 58.9 38 71.1
PGSC0003DMG400024281 Solanum tuberosum HOM05D003092 ORTHO05D003977 1.9e-06 58.9 184 26.6
MD17G1128700 Malus domestica HOM05D003092 ORTHO05D003977 2.5e-06 58.5 320 20.6
Solyc08g014610.4 Solanum lycopersicum HOM05D003092 ORTHO05D003977 3.3e-06 58.2 162 25.3
Sopen08g005600 Solanum pennellii HOM05D003092 ORTHO05D003977 3.3e-06 58.2 162 25.3
Nn3g18586 Nelumbo nucifera HOM05D000826 ORTHO05D004603 4.3e-06 57.8 297 22.2
PGSC0003DMG400025228 Solanum tuberosum HOM05D003092 ORTHO05D003977 4.3e-06 57.8 164 25.0
arahy.Tifrunner.gnm1.ann1.RYD0NS Arachis hypogaea HOM05D000129 ORTHO05D017460 5.6e-06 57.4 42 59.5
Eucgr.K01341 Eucalyptus grandis HOM05D003092 ORTHO05D003977 5.6e-06 57.4 303 20.5
Atru.chr8.993 Acer truncatum HOM05D003092 ORTHO05D003977 7.3e-06 57.0 303 20.5
AT3G22200 Arabidopsis thaliana HOM05D003092 ORTHO05D003977 7.3e-06 57.0 274 21.2
Potri.016G018500 Populus trichocarpa HOM05D003092 ORTHO05D003977 7.3e-06 57.0 319 21.3
Lsat_1_v5_gn_5_7861 Lactuca sativa HOM05D000826 ORTHO05D004603 9.6e-06 56.6 286 24.1
TAR626G1128 Trochodendron aralioides HOM05D000826 ORTHO05D004603 9.6e-06 56.6 298 23.8


User provided reference genes

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