Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 9.0e-165 583.6 303 100.0
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 3.6e-137 491.9 305 83.9
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 4.2e-130 468.4 304 78.9
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 8.8e-104 380.9 283 71.4
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 9.1e-101 370.9 229 80.8
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 1.9e-98 363.2 300 65.7
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 3.2e-98 362.5 309 63.8
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 2.8e-97 359.4 240 76.7
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 4.7e-97 358.6 243 73.7
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.4e-96 357.1 298 64.1
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 4.0e-96 355.5 306 64.1
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 5.2e-96 355.1 315 63.2
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 1.2e-95 354.0 243 74.9
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 2.0e-95 353.2 298 63.8
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 5.7e-95 351.7 306 64.1
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 9.8e-95 350.9 271 66.8
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 2.8e-94 349.4 277 66.4
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 2.8e-94 349.4 309 62.8
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 2.8e-94 349.4 322 60.2
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 3.7e-94 349.0 319 61.1
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 4.9e-94 348.6 308 63.3
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 1.1e-93 347.4 274 67.9
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 1.1e-93 347.4 307 60.9
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 1.8e-93 346.7 296 64.2
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 3.1e-93 345.9 279 65.2
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 4.1e-93 345.5 307 61.6
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 7.0e-93 344.7 279 65.6
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 9.2e-93 344.4 236 73.3
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 2.7e-92 342.8 305 61.3
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 5.9e-92 341.7 240 72.5
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 1.0e-91 340.9 245 71.8
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 1.7e-91 340.1 323 60.7
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 2.9e-91 339.3 312 61.9
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 3.8e-91 339.0 247 70.9
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 6.6e-91 338.2 230 73.9
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 8.6e-91 337.8 318 60.4
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.5e-90 337.0 242 71.5
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 2.5e-90 336.3 310 61.9
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.5e-90 336.3 247 71.3
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 3.3e-90 335.9 237 70.0
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 5.6e-90 335.1 301 62.1
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 7.3e-90 334.7 236 71.6
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 7.3e-90 334.7 311 59.8
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 9.5e-90 334.3 298 64.1
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.2e-89 334.0 328 58.5
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 1.2e-89 334.0 280 65.7
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 2.1e-89 333.2 241 69.3
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 2.1e-89 333.2 243 69.1
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 3.6e-89 332.4 241 71.4
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 4.7e-89 332.0 231 73.2
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 8.0e-89 331.3 247 69.2
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 8.0e-89 331.3 296 62.2
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 8.0e-89 331.3 323 57.6
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 1.0e-88 330.9 317 59.3
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 1.0e-88 330.9 313 60.7
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 2.3e-88 329.7 279 63.1
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 2.3e-88 329.7 296 61.1
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 3.0e-88 329.3 291 62.2
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 4.0e-88 328.9 291 62.9
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 6.8e-88 328.2 268 64.2
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 1.2e-87 327.4 243 67.9
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 1.5e-87 327.0 242 69.0
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 2.0e-87 326.6 311 57.2
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.6e-87 326.2 278 62.6
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 2.6e-87 326.2 311 57.6
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 3.4e-87 325.9 230 70.0
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.4e-87 325.9 268 63.8
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 4.4e-87 325.5 240 68.8
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 9.8e-87 324.3 240 68.3
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 1.3e-86 323.9 286 60.1
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 1.3e-86 323.9 231 72.7
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 1.7e-86 323.6 245 69.0
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 2.2e-86 323.2 224 70.1
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 2.2e-86 323.2 240 67.9
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 2.9e-86 322.8 307 57.7
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 3.7e-86 322.4 268 64.2
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 8.3e-86 321.2 245 67.3
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 8.3e-86 321.2 243 67.5
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 8.3e-86 321.2 261 66.7
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 8.3e-86 321.2 249 67.1
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 8.3e-86 321.2 277 61.7
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 8.3e-86 321.2 306 59.8
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 7.0e-85 318.2 279 59.9
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 7.8e-84 314.7 302 57.0
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 1.3e-83 313.9 281 61.2
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 1.7e-83 313.5 237 65.0
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 3.0e-83 312.8 291 59.1
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 3.9e-83 312.4 245 66.5
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 6.6e-83 311.6 272 60.7
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 2.5e-82 309.7 228 68.4
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 3.3e-82 309.3 283 60.1
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.2e-81 307.4 267 63.3
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 1.2e-81 307.4 299 56.9
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 2.3e-80 303.1 305 56.1
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 2.0e-79 300.1 307 55.7
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 7.5e-79 298.1 224 70.1
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 1.1e-77 294.3 269 59.5
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 8.1e-73 278.1 232 62.9
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 1.8e-72 276.9 239 60.7
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 2.6e-71 273.1 217 66.8
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 6.0e-68 261.9 240 55.8
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 5.1e-67 258.8 243 55.1
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 2.5e-66 256.5 232 59.9
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 1.1e-64 251.1 224 58.5
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 6.8e-64 248.4 218 56.9
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 8.9e-64 248.1 202 64.9
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 8.9e-64 248.1 230 58.3
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 2.2e-62 243.4 217 56.7
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 2.9e-62 243.0 213 60.1
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 2.9e-62 243.0 213 60.1
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 8.4e-62 241.5 221 53.8
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 1.4e-61 240.7 220 55.0
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 2.3e-59 233.4 216 55.6
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 7.3e-58 228.4 233 56.7
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 1.6e-57 227.3 235 58.3
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 4.4e-55 219.2 182 59.3
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.9e-54 216.5 204 59.3
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 2.4e-53 213.4 206 55.8
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 1.2e-52 211.1 218 56.4
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.6e-52 210.7 163 66.3
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.4e-48 197.6 176 56.2
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 2.1e-36 157.1 213 42.3
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 8.7e-35 151.8 127 60.6
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 1.9e-34 150.6 221 39.4
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.5e-31 141.0 195 45.1
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 2.7e-28 130.2 219 33.8
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 1.3e-27 127.9 111 64.0
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 5.0e-22 109.4 57 89.5
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 6.7e-19 99.0 91 57.1
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 7.4e-18 95.5 62 72.6
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 2.7e-12 77.0 52 69.2
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 1.4e-11 74.7 45 73.3
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 2.6e-10 70.5 81 48.1
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 9.7e-10 68.6 89 47.2
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 4.1e-08 63.2 48 62.5
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 4.1e-08 63.2 48 62.5
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 3.4e-07 60.1 36 75.0
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 2.2e-06 57.4 70 47.1
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 2.2e-06 57.4 45 60.0


User provided reference genes

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