Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 2175.2 1147 100.0
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1714.9 1146 78.7
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1681.4 1147 77.5
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1639.8 1144 76.0
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1448.7 1162 69.0
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1441.4 1148 67.9
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1435.2 1157 68.2
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1434.1 1155 68.1
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1422.9 1159 68.6
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1421.4 1167 68.0
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1420.6 1147 67.9
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1418.3 1161 68.2
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1417.9 1174 65.8
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1413.7 1160 66.0
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1413.7 1149 69.0
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1412.1 1161 65.5
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1411.0 1160 67.4
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1409.4 1188 66.6
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1409.0 1144 66.9
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1407.9 1151 68.5
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1406.0 1148 66.5
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1404.4 1147 68.3
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1404.4 1151 68.3
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1404.0 1113 69.8
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1396.3 1162 66.1
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1395.6 1155 65.7
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1394.8 1170 66.8
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1394.8 1160 64.7
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1387.9 1169 66.5
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1385.9 1144 67.7
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1382.5 1154 67.8
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1382.1 1152 66.3
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1381.3 1177 64.3
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1380.5 1153 65.7
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1379.4 1153 66.8
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1379.4 1176 67.2
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1378.6 1164 66.9
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1378.2 1165 67.0
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1377.5 1141 67.0
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1377.5 1177 64.2
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1376.3 1161 67.3
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1375.5 1168 64.4
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1375.1 1143 65.6
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1368.6 1161 64.1
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1368.6 1170 66.2
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1368.2 1171 65.1
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1368.2 1176 64.7
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1368.2 1154 66.4
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1367.1 1154 67.2
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1365.5 1152 64.1
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1365.1 1151 66.3
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1362.8 1172 64.5
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1362.1 1141 66.8
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1360.1 1153 65.8
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1358.6 1164 66.7
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1358.6 1164 66.7
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1358.6 1165 67.0
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1358.2 1202 62.0
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1357.8 1176 65.4
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1356.7 1165 66.4
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1355.1 1202 62.1
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1354.0 1153 66.7
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1352.8 1159 66.4
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1351.7 1159 66.4
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1351.7 1156 66.1
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1350.1 1151 65.3
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1345.5 1176 65.7
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1344.7 1176 65.8
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1343.6 1156 66.2
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1341.3 1154 66.1
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1340.9 1177 65.2
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1340.9 1177 65.4
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1340.1 1174 65.7
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1340.1 1175 65.4
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1338.6 1178 65.5
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1338.2 1177 65.3
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1335.9 1158 65.7
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1327.4 1170 62.9
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1319.7 1169 65.6
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1313.9 1219 61.7
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1293.1 1169 64.1
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1290.4 1162 63.7
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1284.6 1151 64.0
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1282.7 1166 61.4
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1281.9 1146 63.6
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1262.3 1214 60.5
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1127.9 941 67.4
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1125.2 876 69.4
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1099.7 1040 61.2
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1077.0 1233 52.9
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 7.8e-312 1074.3 1236 50.7
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 7.8e-312 1073.9 1227 53.0
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 2.9e-288 995.7 742 69.1
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 7.8e-286 987.6 1156 51.5
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 8.1e-283 977.6 930 58.8
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 4.3e-252 875.5 1392 40.9
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.7e-251 872.5 747 62.8
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 3.9e-237 825.9 597 72.5
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.3e-232 810.8 595 74.8
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 3.3e-212 743.0 522 73.2
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 7.5e-212 741.9 522 73.2
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 5.2e-205 719.2 522 71.5
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 6.3e-203 712.2 626 62.0
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 3.6e-190 669.8 621 59.4
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 3.0e-176 623.6 1171 36.9
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 3.1e-173 613.6 602 59.0
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.3e-160 571.6 564 59.6
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 5.3e-157 559.7 562 57.1
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 4.6e-153 546.6 546 58.4
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.3e-144 518.5 468 61.8
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 6.9e-141 506.1 400 66.8
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 4.0e-133 480.3 539 53.1
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 7.7e-124 449.5 330 71.2
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.1e-117 427.6 321 68.5
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 3.8e-107 394.0 485 54.2
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 3.6e-105 387.5 1190 28.3
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 5.9e-100 370.2 536 43.5
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.6e-92 345.5 359 52.9
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 7.7e-92 343.2 1136 28.7
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 1.5e-82 312.4 211 74.9
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 5.5e-82 310.5 375 49.6
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 4.1e-77 294.3 417 48.4
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 5.4e-77 293.9 375 47.5
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 7.3e-74 283.5 261 55.6
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.6e-73 282.3 251 62.5
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 1.1e-69 269.6 218 67.9
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 2.5e-66 258.5 214 64.0
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 4.3e-66 257.7 149 89.3
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.4e-64 252.7 147 83.7
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 6.8e-56 223.8 173 64.2
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 7.6e-55 220.3 202 56.4
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 7.3e-50 203.8 113 91.2
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 6.2e-49 200.7 106 92.5
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.8e-48 199.1 111 91.0
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 6.8e-48 197.2 113 88.5
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 2.0e-47 195.7 365 37.8
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 7.6e-47 193.7 113 87.6
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 9.9e-47 193.4 113 87.6
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 2.4e-45 188.7 365 37.5
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 5.4e-45 187.6 365 37.3
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 1.6e-44 186.0 365 37.0
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 6.0e-44 184.1 109 88.1
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 5.6e-42 177.6 106 85.8
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 5.8e-39 167.5 99 84.8
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 2.2e-38 165.6 176 53.4
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.2e-38 165.6 589 27.8
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.9e-37 162.5 89 88.8
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 1.3e-35 156.4 97 77.3
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 9.9e-31 140.2 82 82.9
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.7e-28 132.1 123 56.1
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 3.3e-26 125.2 151 45.0
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 1.7e-22 112.8 73 79.5
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 6.5e-22 110.9 75 78.7
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 1.9e-21 109.4 75 77.3
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 5.5e-21 107.8 85 62.4
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 1.6e-20 106.3 170 48.8
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 1.8e-19 102.8 152 43.4
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 3.9e-19 101.7 91 58.2


User provided reference genes

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